Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40815 136 / 4e-37 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G13350 56 / 9e-09 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G04540 47 / 1e-05 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G04360 45 / 3e-05 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G33320 45 / 7e-05 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT4G01200 42 / 0.0003 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012856 [exp] 387 / 1e-122 AT1G76820 1211 / 0.0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Lus10014466 [exp] 55 / 4e-08 AT1G04540 245 / 7e-76 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10032780 [exp] 49 / 3e-06 AT2G33320 227 / 1e-70 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10003570 [exp] 49 / 4e-06 AT2G33320 222 / 7e-67 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10039259 [exp] 42 / 0.0003 AT5G23950 160 / 3e-48 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10027502 [exp] 41 / 0.0008 AT5G23950 164 / 8e-50 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G065500 [exp] 190 / 4e-58 AT2G40815 213 / 1e-66 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.013G048400 [exp] 49 / 3e-06 AT2G33320 211 / 6e-63 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.019G021300 [exp] 48 / 5e-06 AT3G04360 213 / 2e-65 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G172300 [exp] 48 / 7e-06 AT2G33320 265 / 8e-82 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.010G065300 [exp] 46 / 2e-05 AT2G13350 261 / 6e-83 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.002G166400 [exp] 45 / 3e-05 AT4G01200 211 / 4e-68 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G064900 [exp] 42 / 0.0003 AT1G07310 150 / 1e-42 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030501 pacid=23140559 polypeptide=Lus10030501 locus=Lus10030501.g ID=Lus10030501.BGIv1.0 annot-version=v1.0 ATGCCGAACAAGATCTGCATCGAAGCAACCCTCATCTCAGCTCGCGGCCTACGCCGCTCCTCTTCCTCCCTCTGGAAGCGCCACTGGTACGCAGTCGGCT GGATCGACCCCAAAACCAAGTACTGCACCACCGTATCAAAGGACGGAAGCTCAACGCCCACTTGGAAGACCAAGTTCTCTACTTTACTGGACGAGTCCAG CATTCTAGACTCGGCAGCAGCACTGACTGTTGAAGTCTACAGCAGAGAGCCCATCTTCCTCAGGGAATCCCTCGAAGGCACTGCCACCATCTTGCTCAAA GAGTTCGTCTCTAAGTACTACGCGAATAAGGATAGGGGTTCTTCTTCTTCTTCTGGTGGTGGTGAAGAAGTTGGGAGCTTCCAGCTAAGGAAACGGAGCT CGAATCGGAGTCGGGGTTTGGTTGATGTTTCGATTCGGGTTGCTGATCAGGAAAGTGGGGATCTTTCTGGTTCTTCGTCCTACCCTGGAGGAGATGAAGG AATTGTGCTGAAGGATTATCAGCATGGCAATAGTCAAACTCAGATGTTCCCCTTACCCCCATTTCAACGACACCCTCAGAATCCAACACCATCCACCTCT GCAGGGTTCACTCATCAAATGCCATACTACCCTGCTTATCATCATCATCATCCTACTGGTCCTGGAAATCAAGCTTTATATCCAACGATGCCACCTCATC ATCCGCCTCCATTGCACTTTCCCGCGGCTAATGTGGGTTACTACACACCCACATTCGTTCCGAATTCGGAGTATGTAAACATGCCAGCATCTGGAGCAAC ATCAGCAGCACATGGAAGGTGGTCCGGAAGACCCACGGCTGGTAATTTAGCTGCGGGAGCTGGAGTTGGAGGAGCTCTGGCTGCCGGGGCTATGATTTAC GGAGACGATGTCATGTCTGCATTTGGCAGCATTCCCTTACAAGATCCCAGTCTTGCCATATCATTAGATCCTCCCTTTCTATGA
AA sequence Show only first row Show all	>Lus10030501 pacid=23140559 polypeptide=Lus10030501 locus=Lus10030501.g ID=Lus10030501.BGIv1.0 annot-version=v1.0 MPNKICIEATLISARGLRRSSSSLWKRHWYAVGWIDPKTKYCTTVSKDGSSTPTWKTKFSTLLDESSILDSAAALTVEVYSREPIFLRESLEGTATILLK EFVSKYYANKDRGSSSSSGGGEEVGSFQLRKRSSNRSRGLVDVSIRVADQESGDLSGSSSYPGGDEGIVLKDYQHGNSQTQMFPLPPFQRHPQNPTPSTS AGFTHQMPYYPAYHHHHPTGPGNQALYPTMPPHHPPPLHFPAANVGYYTPTFVPNSEYVNMPASGATSAAHGRWSGRPTAGNLAAGAGVGGALAAGAMIY GDDVMSAFGSIPLQDPSLAISLDPPFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40815			Calcium-dependent lipid-bindin...		Lus10030501 [exp]	0	1
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10015778 [exp]	5.5	0.8520
AT3G09070			Protein of unknown function (D...		Lus10035513 [exp]	5.7	0.8549
AT5G03970			F-box associated ubiquitinatio...		Lus10022006 [exp]	6.3	0.8612
AT5G25510			Protein phosphatase 2A regulat...		Lus10008104 [exp]	7.7	0.8475
AT3G47850			unknown protein		Lus10004255 [exp]	7.7	0.8057
AT2G45590			Protein kinase superfamily pro...		Lus10036534 [exp]	9.2	0.8071
AT4G32330			TPX2 (targeting protein for Xk...		Lus10002915 [exp]	12.0	0.8344
AT2G47850	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10035248 [exp]	13.0	0.8055
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10037028 [exp]	14.9	0.8378
AT1G21090			Cupredoxin superfamily protein...		Lus10028576 [exp]	17.5	0.8345

Compare expression of checked genes

Lus10030501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.