Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53870 409 / 1e-146 Ribosomal protein S3 family protein (.1) AT5G35530 409 / 1e-146 Ribosomal protein S3 family protein (.1) AT2G31610 408 / 4e-146 Ribosomal protein S3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012857 [exp] 466 / 8e-169 AT2G31610 411 / 3e-147 Ribosomal protein S3 family protein (.1) Lus10030503 [exp] 461 / 7e-167 AT5G35530 411 / 2e-147 Ribosomal protein S3 family protein (.1) Lus10033442 [exp] 457 / 2e-165 AT2G31610 413 / 3e-148 Ribosomal protein S3 family protein (.1) Lus10016705 [exp] 65 / 1e-12 AT1G71090 134 / 2e-37 Auxin efflux carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G076800 [exp] 428 / 2e-154 AT5G35530 409 / 6e-147 Ribosomal protein S3 family protein (.1) Potri.015G071700 [exp] 428 / 2e-154 AT5G35530 421 / 3e-151 Ribosomal protein S3 family protein (.1) Potri.006G222100 [exp] 427 / 6e-154 AT5G35530 425 / 5e-153 Ribosomal protein S3 family protein (.1) Potri.018G049100 [exp] 427 / 7e-154 AT5G35530 424 / 8e-153 Ribosomal protein S3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00189 [flax] [poplar] Ribosomal_S3_C Ribosomal protein S3, C-terminal domain CL0007 [flax] [poplar] KH PF07650 [flax] [poplar] KH_2 KH domain
Representative CDS sequence Show only first row Show all	>Lus10030502 pacid=23140747 polypeptide=Lus10030502 locus=Lus10030502.g ID=Lus10030502.BGIv1.0 annot-version=v1.0 ATGGCGGCTGCGACTCAGATGAGCAAGAAGCGGAAGTTTGTCGCTGATGGAGTGTTCTTCGCCGAGCTGAACGAAGTTCTGACCAGGGAGCTCGCCGAGG ATGGTTACTCCGGCGTTGAGGTTAGGGTCACCCCGATGCGCACTGAGATTATCATCAGGGCTACCCGCACCCAGAACGTCTTGGGTGAGAAAGGAAGGAG GATCAGAGAGCTTACCTCTGTTGTCCAGAAGCGGTTTAAGTTCCCGGCTGACAGTGTTGAGCTTTACGCTGAAAAGGTGAACAGCAGAGGTCTTTGCGCC ATTGCTCAGGCCGAGTCTCTGCGTTACAAGCTCCTTGGTGGACTTGCTGTCAGAAGGGCCTGCTATGGTGTGTTGAGGTTTGTCATGGAGAGCGGAGCTA AGGGCTGTGAGGTTATTGTCAGTGGAAAGCTCAGAGCACAACGTGCTAAAAGCATGAAGTTCAAGGATGGATACATGATCTCATCCGGGCACCCAGTCAA TGAGTACATCGACTCTGCTGTGAGACATGTTCTCTTGAGACAGGGTGTTCTTGGGATCAAGGTGAAGATCATGCTCGACTGGGATCCAAAAGGCAAGCTT GGACCAACTACTCCTCTTCCTGATCTTGTCACTATTCACCCACCAAAGGAGGAGGAAGAGTACATGAGGGCTATTACCGCGATGTCCGCTCCGGCTCCTG CTGCCGATATCGAAATTGCCGCTCCTATCGCTGTTCCTGTTTGA
AA sequence Show only first row Show all	>Lus10030502 pacid=23140747 polypeptide=Lus10030502 locus=Lus10030502.g ID=Lus10030502.BGIv1.0 annot-version=v1.0 MAAATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPADSVELYAEKVNSRGLCA IAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKL GPTTPLPDLVTIHPPKEEEEYMRAITAMSAPAPAADIEIAAPIAVPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35530			Ribosomal protein S3 family pr...		Lus10030502 [exp]	0	1
AT3G05590		RPL18	ribosomal protein L18 (.1)		Lus10015198 [exp]	2.2	0.9776
AT2G43770			Transducin/WD40 repeat-like su...		Lus10002860 [exp]	2.2	0.9692
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10010429 [exp]	2.8	0.9755
AT4G39880			Ribosomal protein L23/L15e fam...		Lus10041700 [exp]	2.8	0.9700
AT2G47110		UBQ6	ubiquitin 6 (.1.2)		Lus10030595 [exp]	3.0	0.9732
AT5G64670			Ribosomal protein L18e/L15 sup...		Lus10023078 [exp]	4.1	0.9567
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Lus10023565 [exp]	4.2	0.9692
AT3G09630			Ribosomal protein L4/L1 family...		Lus10014431 [exp]	6.2	0.9594
AT5G13780			Acyl-CoA N-acyltransferases (N...		Lus10016378 [exp]	7.5	0.9550
AT2G04390			Ribosomal S17 family protein (...		Lus10004208 [exp]	7.5	0.9656

Compare expression of checked genes

Lus10030502 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.