Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56430 380 / 1e-130 unknown protein AT2G40800 368 / 1e-126 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012858 [exp] 566 / 0 AT2G40800 422 / 8e-148 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G062200 [exp] 397 / 5e-138 AT2G40800 435 / 2e-152 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030504 pacid=23140696 polypeptide=Lus10030504 locus=Lus10030504.g ID=Lus10030504.BGIv1.0 annot-version=v1.0 ATGTCAAAACCCTCGCACCATAGAATCATCCAAGGTCTCCTCCGCCTCCGTTTCTCTTCGCCACCAACCTCCATCCCTCGATTTCAACAACCTACTTCTT CTTCCCCTTTCTCTACTTCCACTTCCTACCCAAAGTTCTCTCCTTCCACTTCGAACCCTACTCTACCGAAGCTCCCAAACTCTTCTTCTACTTCAACTTT TCTTCCGAGGACTTACTGCTATGGCCTCCGTCACTACTCGTTCAAGCCCTCCCCCGGCGTTGGGAAAGGGGTCGGCGGCGGGGAATTCGCCAAACGGGCG TTGGAGAAGCCTGTAGATGTAGTTTCCTCTGTGTTCTCCAAGTACCGGAGAGCCTTGGGTTTGCACTTGGATGCATTTTGGAGGAGGAACAATCTGTTTC TGTTTGGGGTTGGAGCTGTGGTGCTGTGTACTTTGCTTTGGAGGGCTATGTTTGGGTTTGCCAGCACTTTTTGTCATCTCTCTGATGGCATGGCCAAGTA TGGCTTCCTCGCCCTCTCCACTGCCATGGTTGCCTTTGCTGGACTATACGTTCGCTCGCGACTCACAATTAACCCTGATAAGGTTTATAGAATGGCTATG AGGCGGCTAAACACGGATGCTGGGATTCTTGAAGTCATGGGTGCTCCTCTCGCTGGAACTGAGTTGAGAGCTTATGTGATGTCAGGAGGAGGGTTTAAAA TGAAGAACTTCAAGCCTACTCGTAGTAACAAACGTTGTTTCCTCATCTTCCCAGTACAAGGTTCCGAGAGAAAGGGCCTCGTCAGCGTTGAAGTTAAGAA GAAAAAGGGCCAGTATGATATGAGGTTACTGGCAGTGGATGTTCCAATGGCGTCTGGACCTGACCAGAGGCTGTTTTTGATCGGAGACGAAGATGAGTAC AAAGTCGGCGGAGGGATCATTGGGGAGCTGAGAGATCCTGTGGTGAGAGCCATGACTGCTAGCAAGGAATTCGACCATCTTGACGAAATAGAGGAAGAGG AAGATGCTGAGAGAGAGCTTGAGGAAGCAGAAAGGAAGCGACAGGAGGAACTCGAAAAGCTCAAGAAGGATGGATCATAG
AA sequence Show only first row Show all	>Lus10030504 pacid=23140696 polypeptide=Lus10030504 locus=Lus10030504.g ID=Lus10030504.BGIv1.0 annot-version=v1.0 MSKPSHHRIIQGLLRLRFSSPPTSIPRFQQPTSSSPFSTSTSYPKFSPSTSNPTLPKLPNSSSTSTFLPRTYCYGLRHYSFKPSPGVGKGVGGGEFAKRA LEKPVDVVSSVFSKYRRALGLHLDAFWRRNNLFLFGVGAVVLCTLLWRAMFGFASTFCHLSDGMAKYGFLALSTAMVAFAGLYVRSRLTINPDKVYRMAM RRLNTDAGILEVMGAPLAGTELRAYVMSGGGFKMKNFKPTRSNKRCFLIFPVQGSERKGLVSVEVKKKKGQYDMRLLAVDVPMASGPDQRLFLIGDEDEY KVGGGIIGELRDPVVRAMTASKEFDHLDEIEEEEDAERELEEAERKRQEELEKLKKDGS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40800			unknown protein		Lus10030504 [exp]	0	1
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Lus10041519 [exp]	2.4	0.9612
AT1G72330		ALAAT2	alanine aminotransferase 2 (.1...		Lus10003935 [exp]	2.6	0.9625
AT2G40800			unknown protein		Lus10012858 [exp]	2.6	0.9503
AT3G62120			Class II aaRS and biotin synth...		Lus10016281 [exp]	3.9	0.9558
AT3G63250		HMT-2, ATHMT-2 ...	HOMOCYSTEINE METHYLTRANSFERASE...		Lus10006901 [exp]	6.6	0.9477
AT2G36460			Aldolase superfamily protein (...		Lus10023870 [exp]	6.9	0.9543
AT1G16300		GAPCP-2	glyceraldehyde-3-phosphate deh...		Lus10000872 [exp]	7.3	0.9517
AT5G08680			ATP synthase alpha/beta family...		Lus10034631 [exp]	9.2	0.9532
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Lus10036976 [exp]	9.4	0.9503
AT1G76340		GONST3	golgi nucleotide sugar transpo...		Lus10015806 [exp]	9.5	0.9361

Compare expression of checked genes

Lus10030504 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.