Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30500 52 / 5e-07 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) AT5G05180 49 / 6e-06 unknown protein AT5G58320 49 / 6e-06 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3) AT3G10880 45 / 6e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012861 [exp] 571 / 0 AT5G05180 124 / 2e-31 unknown protein Lus10029012 [exp] 261 / 9e-83 AT5G05180 146 / 5e-39 unknown protein Lus10034251 [exp] 248 / 5e-78 AT5G05180 149 / 4e-40 unknown protein Lus10012862 [exp] 196 / 5e-61 ND 37 / 0.008 Lus10019111 [exp] 52 / 8e-07 AT5G58320 347 / 3e-113 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3) Lus10034448 [exp] 51 / 1e-06 AT5G58320 350 / 2e-114 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G061600 [exp] 174 / 5e-49 AT5G58320 180 / 8e-50 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3) Potri.013G158100 [exp] 93 / 3e-20 AT2G30500 384 / 7e-127 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.019G131000 [exp] 76 / 1e-14 AT2G30500 389 / 4e-129 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.001G094266 [exp] 45 / 2e-05 AT1G64320 65 / 1e-12 myosin heavy chain-related (.1) Potri.003G137300 [exp] 45 / 8e-05 AT1G64320 237 / 1e-69 myosin heavy chain-related (.1) Potri.003G137400 [exp] 42 / 0.0007 AT5G41790 384 / 6e-109 COP1-interactive protein 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030507 pacid=23140743 polypeptide=Lus10030507 locus=Lus10030507.g ID=Lus10030507.BGIv1.0 annot-version=v1.0 ATGGATCACAGTGAAGATGTTGTCTCTCCTGTGAAGTTTCAAGAGATGATGTCTAAATTGATTCCTGAGGTGGATCAAGTCTACCCAACTTATGACTCCG ACACTTCTTTGCTGACTCCTGATGCAAAGGTGGCTGGAAACAAGGTTCATCAAGTTGATTCTGCAAGTTCTGGTGGTGCTAATAGCTCTGATCTGTCATT AAAGGAAGGGTCCGAGTCATCTCCATCGCTATCAGATTCCGACTCAGAATCTTCCAACTCCACAAATGCTTACTACAGCCTTCCTATGAACACTGACAAG AAAGGAACGTTTTTCCAGACTGAAGAGAAGAAGAAGGCTACTTATGAAGAACTGCTTCAGAAAGTGGTGATGTACGAGGATGAAATCAAAGTTTCGAATC TGAGATTGCAGAAGTCTGAGGAAGAAGTGTTCTGGTTGAAGACTGAGCTTAGAAAGGGGGAAGATACTTTGCAGTCTCGGCTCGAATCTGTATATAGAGA GATTGACGACAAGGAGGCTGATCTCGAAACAGAGAAGAGAAGAGTCGTGGAGCTTGAAACCAAATTAGCTGAGGATTCATGGCTAGCGCAGAACCAGACT AAGCTGGCTAAAGAAGAGATTGAAGCGTTCAAAGCTGAGCTCGTTTTCGGAAGGAAACAAGTTACAGCATTGGAAGAAAGCAATTCGAGGTACAGAACAC TGCATGCGTCGTTGGAACACAAGCTGACACAATGTGAAGCTGAGAAGATGAAAATGAAAACGTCGTACGATGCTCAGGAGATTCAGTTTCGAGGAGAGAT TAGTCGGTTGAAGGTCGATCTTAACTGCAGAGCTGTACAGGTGGACGGGTTAATAAAGAGCTATGATACAGTTAATGCTGAGAGAGACGAGTTGAATGCC AAGGTGGACAGAATGAGAGATGAGATTCATAACCAGGAGATTCAGAAGAGGGAAATGGAGGAGAATCTAGAAAAGCTGAATCTTGAAAACGGGGAGCTGG TAGAGGAACTGAGGTTGAGAGCTGTGGAGCTTGAGAAGGAGGTGGATAGGCAGAATGGTGAGATCTTAGCCATGGCTGAGGAGAAAAGAGAGGCAATAAG GCAGCTTTGCTTCTCTTTGGAGCATTACAGGAGTGATTACAAAGAGCTTCGTGAAGCCATTGTTGGTCAAAAAAGGGTTCGCATAGTAGCTTAG
AA sequence Show only first row Show all	>Lus10030507 pacid=23140743 polypeptide=Lus10030507 locus=Lus10030507.g ID=Lus10030507.BGIv1.0 annot-version=v1.0 MDHSEDVVSPVKFQEMMSKLIPEVDQVYPTYDSDTSLLTPDAKVAGNKVHQVDSASSGGANSSDLSLKEGSESSPSLSDSDSESSNSTNAYYSLPMNTDK KGTFFQTEEKKKATYEELLQKVVMYEDEIKVSNLRLQKSEEEVFWLKTELRKGEDTLQSRLESVYREIDDKEADLETEKRRVVELETKLAEDSWLAQNQT KLAKEEIEAFKAELVFGRKQVTALEESNSRYRTLHASLEHKLTQCEAEKMKMKTSYDAQEIQFRGEISRLKVDLNCRAVQVDGLIKSYDTVNAERDELNA KVDRMRDEIHNQEIQKREMEENLEKLNLENGELVEELRLRAVELEKEVDRQNGEILAMAEEKREAIRQLCFSLEHYRSDYKELREAIVGQKRVRIVA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05180			unknown protein		Lus10030507 [exp]	0	1
AT5G05180			unknown protein		Lus10012861 [exp]	1.0	0.9348
AT3G13275			unknown protein		Lus10007090 [exp]	1.7	0.8809
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10016156 [exp]	3.5	0.9085
AT1G04420			NAD(P)-linked oxidoreductase s...		Lus10003751 [exp]	4.9	0.8568
AT5G41050			Pollen Ole e 1 allergen and ex...		Lus10012553 [exp]	6.0	0.8429
AT1G47720		OSB1	Organellar Single-stranded, Pr...		Lus10014728 [exp]	6.7	0.8312
AT1G12330			unknown protein		Lus10032197 [exp]	17.9	0.7868
AT1G63260		TET10	tetraspanin10 (.1.2.3)		Lus10029562 [exp]	22.3	0.8418
AT5G65120			unknown protein		Lus10016802 [exp]	22.9	0.8511
AT5G62360			Plant invertase/pectin methyle...		Lus10031711 [exp]	25.5	0.8058

Compare expression of checked genes

Lus10030507 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.