Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05190 110 / 1e-24 Protein of unknown function (DUF3133) (.1) AT3G56410 75 / 2e-13 Protein of unknown function (DUF3133) (.1), Protein of unknown function (DUF3133) (.2) AT4G01090 66 / 1e-10 Protein of unknown function (DUF3133) (.1) AT3G61670 64 / 3e-10 Protein of unknown function (DUF3133) (.1) AT1G01440 64 / 4e-10 Protein of unknown function (DUF3133) (.1) AT2G46380 61 / 4e-09 Protein of unknown function (DUF3133) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012863 [exp] 1194 / 0 AT5G05190 110 / 9e-25 Protein of unknown function (DUF3133) (.1) Lus10034250 [exp] 123 / 6e-30 AT5G05190 68 / 4e-12 Protein of unknown function (DUF3133) (.1) Lus10029013 [exp] 119 / 1e-28 AT5G05190 64 / 6e-11 Protein of unknown function (DUF3133) (.1) Lus10001910 [exp] 60 / 9e-09 AT1G01440 275 / 5e-82 Protein of unknown function (DUF3133) (.1) Lus10003040 [exp] 58 / 4e-08 AT3G61670 484 / 1e-158 Protein of unknown function (DUF3133) (.1) Lus10005153 [exp] 57 / 6e-08 AT2G46380 503 / 3e-166 Protein of unknown function (DUF3133) (.1) Lus10003905 [exp] 57 / 8e-08 AT2G46380 271 / 8e-80 Protein of unknown function (DUF3133) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G061400 [exp] 273 / 7e-77 AT5G05190 107 / 2e-23 Protein of unknown function (DUF3133) (.1) Potri.014G095700 [exp] 63 / 8e-10 AT3G61670 559 / 0.0 Protein of unknown function (DUF3133) (.1) Potri.003G137700 [exp] 61 / 5e-09 AT3G61670 335 / 1e-101 Protein of unknown function (DUF3133) (.1) Potri.001G093900 [exp] 54 / 5e-07 AT3G61670 370 / 2e-114 Protein of unknown function (DUF3133) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF11331 [flax] [poplar] zinc_ribbon_12 Probable zinc-ribbon domain
Representative CDS sequence Show only first row Show all	>Lus10030508 pacid=23140561 polypeptide=Lus10030508 locus=Lus10030508.g ID=Lus10030508.BGIv1.0 annot-version=v1.0 ATGGCGAGTGTAGAAAATGGAGCAGCGGCGGCCCCGAAGATAAGGTTTGTACAGTGTCCTAGATGTAGGCAGATTTTGCCTGAGCTGCCCAACGTTCCTG TTTACCAGTGCGGCGGATGCGGCATCCATCTCCAAGCCAAAATTCGGCCGCGAAATGGGGAAACCAATTCTTCGTCGGCTGATTCAGCTGATTCTGCCCG GTTGAGTAGATTGGAATCCAGTGGGAGCAGTTCTGTTCATCAGCAGCCTGATGTTCCTCCGGATTCATCTGTTAAGTTGAATGATGATGGGGAGACAGGG GGATCGAATCCGGTGGTAGACCGCGAATTATCGATGAAAGATCAAGTGGTGGAGGATGATGAGGTTGCTGCTCATGGTGAAAATTCAGTTTGCAGTGTTG ATAGTACTACTTCTGTTGATGATGCTAATGATGATGGTGTTAAGTTGATTGATGATGGGGAAACCAGGGGATCGGATCGTGATGAAATCGAAGAAATAAG CAAAGATGAATGTGGTGATCAGCAGGTGGAGGATGAGGTTGCTGCTCATGGTGAAAATTCAGTTTGCAGTGTTGATAGTACTACTTCTGTTGATGATGCT AATGATGATGGTGTTAAGTTGATTGATGATGGGGAAACCAGGGGATCGGATCGTGATGAAATCGAAGAAATAAGCAAAGATGAATGTGGTGATCAGCAGG TGGAGGATGAGGTTGCTGCTCATGGTGAAAATGCAGCTTACAGTACTGATCATAGTACTACTTCTGTTGAGAAGCAGGAAATGTCTCCAGATGTTGGACT GCATTCTGAATCGGAAGCCAGCAGCGAAGTTATGAAGGCAGCTATCATGGTTGAGGATCATTCCGAAGCGAGAAGATCGAGCAGTGATAGCCTCGTCAAT GAAGAAGCTATAGAAGCTGGTTCGACAGTTGTTGCGATTAGACCAGCATCAGCATCAAAATCTGGAGAAGTTATCGCGTCTCCTCCTAATCGGATGCAGG AAAGGGTGCGTTTTGATCCTGTTCAGTATGCAGATACATTAGAAGAAGCTGATGATTTCGTCAGTTCGGAGCTAAGTGGAATGCTTGTGGATTTGACGAA ATCTCCAACTACTAGAAGTTGTCATGCTTATTACGATGGAATCTCCGAGGGGACTGATGATCAGGTTCCTGGTCGACTGAGACCTTATTCGAGGAATGCT CAAGTTCTTAAGCCTGAAAGCTATATGATAGCTGAAGAAAAGGCAGAAAGTGATAGGAATAACTTGGGATTGCAGTACCAGCAGAAGAAATATCATTCAC CAGATATGGATTTGGATTCAGATTATGTCCTCCCTAGTAGAAAAAACTTGGAATTCCAGTATCAGCAGAAGAAGTATCATTCCCCAGATACGAATTTGGA TTCGGAAGAACTGCGAGGGGTTGCAGGACTGAACAATCCAGTTAGAAGTTGGGGGAGGTTGGAAAGTGATGACGAACTTCCGAGGAATTCGTACATGAAT GGCTACGAAAGTGGCAGCACCTCGTATCAATCGCGGAGCGGATTGCCGCATAGCAACTTAAACTCCCATCCGCGAATTAATGCAGCAGATATCGAGCAGG AGAGGATTAGATTGCTGAGAATGGTCTACGAGTTGGAGGATCAACTCACCAGATCCTGCTCTCTGAATGAGAATGTTAGTAGAAAGGTTTTTTCGGGAAA TCTTCGAAGGGACGAACATGTTCCTTTGAATTATGATATGGATCGCAGATCGTATAGTAGAGAGGTAATTACCAGCTGGTCTCAGCAGCAAAGACAGCCT TTAAAAATCCCGTTCTCTGCTGAAGCAACGACGAATGGCAGGCATAAAGTTGATCATCATCAGTCTTCTTGTTGCAACCATCAGGAATGGAAATGCTCAA GCCAATTGCCAACACATTGCTCTAATCACAACAGGGTGTTCTGCAGGGCGCACTCCGGTTTGAGTTCGTGCAACTCGTATGGCTCATGTCCCTCGAGTCC TCAGAACCGTGCAGGCTCCGAGTATTCCTCAATTCATGGCCGGGCAACAATGTCCTGCGAGCAAATGCATGGTAGAGACAGCCGCGATTTGAACAGGTAC ATTAGGGAGAAGCAACACTTCGCTGCTGGTTCGAAGAAGAGGCATCTTCGTCCAGTAGCCGGTGGAGCCCCGTTTTTAGCTTGCCATTTTTGCTTGAAAC AGCTGCAACTGCCTGCGGATTTCCTTGTGTCGAAACGTAAGTTCCATACGCTGAGGTGTGGCGCTTGCTCTGAGATACTCAAGTTCTCTCTAGTGAACCG GAGTCATCTGGTCCCAAACTTCACCGAGGAGGAGGATCATGCTCGTCGTCGTACGTCCTTCCACCATGCAGCATCTCGCAGCATGGCGAATTCGTCATCT GGTTCGTTTAAACACGGTGAACAACGACAACAAAACAACAGCATAATACCGGACAAGCTCATCAAAAGCAACGGTAGGAGTCCAGTGGAAACACACCGTG GCACTGGACCTTCATACAGTTCGAAGAACGATAAAGAGAAGGAGATACAAGGAATAGGCGGCTCGCCTCTTCATCGACTGATGGGGTACTCCACCTTAAG TGGCGTCCTGCGGCGTAACTGA
AA sequence Show only first row Show all	>Lus10030508 pacid=23140561 polypeptide=Lus10030508 locus=Lus10030508.g ID=Lus10030508.BGIv1.0 annot-version=v1.0 MASVENGAAAAPKIRFVQCPRCRQILPELPNVPVYQCGGCGIHLQAKIRPRNGETNSSSADSADSARLSRLESSGSSSVHQQPDVPPDSSVKLNDDGETG GSNPVVDRELSMKDQVVEDDEVAAHGENSVCSVDSTTSVDDANDDGVKLIDDGETRGSDRDEIEEISKDECGDQQVEDEVAAHGENSVCSVDSTTSVDDA NDDGVKLIDDGETRGSDRDEIEEISKDECGDQQVEDEVAAHGENAAYSTDHSTTSVEKQEMSPDVGLHSESEASSEVMKAAIMVEDHSEARRSSSDSLVN EEAIEAGSTVVAIRPASASKSGEVIASPPNRMQERVRFDPVQYADTLEEADDFVSSELSGMLVDLTKSPTTRSCHAYYDGISEGTDDQVPGRLRPYSRNA QVLKPESYMIAEEKAESDRNNLGLQYQQKKYHSPDMDLDSDYVLPSRKNLEFQYQQKKYHSPDTNLDSEELRGVAGLNNPVRSWGRLESDDELPRNSYMN GYESGSTSYQSRSGLPHSNLNSHPRINAADIEQERIRLLRMVYELEDQLTRSCSLNENVSRKVFSGNLRRDEHVPLNYDMDRRSYSREVITSWSQQQRQP LKIPFSAEATTNGRHKVDHHQSSCCNHQEWKCSSQLPTHCSNHNRVFCRAHSGLSSCNSYGSCPSSPQNRAGSEYSSIHGRATMSCEQMHGRDSRDLNRY IREKQHFAAGSKKRHLRPVAGGAPFLACHFCLKQLQLPADFLVSKRKFHTLRCGACSEILKFSLVNRSHLVPNFTEEEDHARRRTSFHHAASRSMANSSS GSFKHGEQRQQNNSIIPDKLIKSNGRSPVETHRGTGPSYSSKNDKEKEIQGIGGSPLHRLMGYSTLSGVLRRN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05190			Protein of unknown function (D...		Lus10030508 [exp]	0	1
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10006637 [exp]	8.9	0.6750
AT4G16150	CAMTA		calmodulin binding;transcripti...		Lus10037738 [exp]	10.6	0.6520
AT1G67730		ATKCR1, YBR159,...	beta-ketoacyl reductase 1 (.1)		Lus10036940 [exp]	10.8	0.6843
AT5G10710			unknown protein		Lus10026945 [exp]	15.7	0.7025
AT2G41540		GPDHC1	6-phosphogluconate dehydrogena...		Lus10035438 [exp]	17.1	0.7250
AT5G57950			26S proteasome regulatory subu...		Lus10022151 [exp]	17.1	0.6747
AT5G58520			Protein kinase superfamily pro...		Lus10031294 [exp]	29.5	0.6003
AT5G40380		CRK42	cysteine-rich RLK (RECEPTOR-li...		Lus10036028 [exp]	30.8	0.6057
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10028445 [exp]	31.0	0.6621
AT4G38520			Protein phosphatase 2C family ...		Lus10025076 [exp]	31.5	0.5594

Compare expression of checked genes

Lus10030508 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.