Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05200 746 / 0 Protein kinase superfamily protein (.1) AT5G64940 153 / 2e-39 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) AT4G24810 147 / 1e-38 Protein kinase superfamily protein (.1.2.3) AT1G79600 150 / 2e-38 Protein kinase superfamily protein (.1) AT4G31390 149 / 3e-38 Protein kinase superfamily protein (.1.2) AT3G07700 146 / 2e-37 Protein kinase superfamily protein (.1.2.3) AT5G50330 138 / 2e-35 Protein kinase superfamily protein (.1.2) AT3G24190 135 / 3e-33 Protein kinase superfamily protein (.1) AT1G71810 127 / 8e-31 Protein kinase superfamily protein (.1) AT2G39190 120 / 2e-28 ATATH8 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012865 [exp] 838 / 0 AT5G05200 680 / 0.0 Protein kinase superfamily protein (.1) Lus10012864 [exp] 182 / 1e-55 AT5G05200 159 / 1e-47 Protein kinase superfamily protein (.1) Lus10035701 [exp] 153 / 2e-39 AT1G79600 1034 / 0.0 Protein kinase superfamily protein (.1) Lus10036636 [exp] 153 / 2e-39 AT5G64940 1087 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Lus10006363 [exp] 146 / 4e-37 AT3G07700 1066 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10020152 [exp] 145 / 9e-37 AT4G31390 1041 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012317 [exp] 144 / 4e-36 AT3G07700 1051 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10035853 [exp] 140 / 4e-35 AT5G64940 1046 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Lus10032628 [exp] 135 / 9e-34 AT4G24810 710 / 0.0 Protein kinase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G061300 [exp] 769 / 0 AT5G05200 830 / 0.0 Protein kinase superfamily protein (.1) Potri.006G275600 [exp] 162 / 1e-42 AT4G31390 1058 / 0.0 Protein kinase superfamily protein (.1.2) Potri.005G083200 [exp] 150 / 1e-38 AT5G64940 1068 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.015G091000 [exp] 147 / 1e-38 AT5G50330 752 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G093600 [exp] 147 / 2e-38 AT4G24810 723 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.007G082500 [exp] 147 / 2e-37 AT5G64940 1081 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.014G168600 [exp] 137 / 3e-34 AT3G07700 1038 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.002G000100 [exp] 134 / 3e-33 AT1G79600 949 / 0.0 Protein kinase superfamily protein (.1) Potri.001G050700 [exp] 129 / 2e-31 AT3G24190 1233 / 0.0 Protein kinase superfamily protein (.1) Potri.002G061000 [exp] 126 / 1e-30 AT1G71810 915 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF03109 [flax] [poplar] ABC1 ABC1 family
Representative CDS sequence Show only first row Show all	>Lus10030509 pacid=23140625 polypeptide=Lus10030509 locus=Lus10030509.g ID=Lus10030509.BGIv1.0 annot-version=v1.0 ATGATCTCAGCTCCTGCTCTGAGAGGATGCTCTCGTTTCACTTTCTCCAACCCTTTCCCGATTCCTTGCCTCAGCAGCTATCGGGTAAAATTATCACAGT CGTCACTCGGTAATAAGAGATTGAGAAGTCCTGCAAAACCCTTCCCCATTTTTGCCCAGTATTCTCAAACTCAGTCTCAGACGCCCTTCTCTTCAAGTCG TCTCCAAGATAGCCTAGAGAACTTGCCGAAACTGGTGGAGGATATCATACAAACATCCCTTAATACCGGTCCACGTGGAGCTCTGAGGTTTGCGCAAGGT GTTCAAGCAGTCGTTGGAGTTGGCAGCGAGTGGCTTCAAGATGCATCACGGTCAGCGAATTCGCCTGGTGGGCTACCTGTTGACATGAGGCTTGGAGTGC TTTCTCCTGTGTATTTGAGGAAATTGTTTGAACGCATGGGAGCAACTTATGTTAAATTGGGCCAGTTCGTAGCATCTGCACCAACATTGTTCCCACCAGA GTACGTTGAGGAATTTCAAAAGTGTTTCGATAGAGCTCCAACTATTCCGTTCCAAGAAATTCAAGCAATATTGCGTGAGGAACTCGGAAGACCAATAGAG GCGGTATATGAGTATGTGGACCCAACCCCAATTGCCTCAGCCTCTATAGCACAGGTGCATGGTGCAAGACTCAAAGGATCCCAGGAGGATGTGGTGATAA AGGTTCTGAAACCAGGAATAGAAGATATTTTAGTGGCAGATTTGAACTTCATATTTATCATTGCTCGCGTATTTGAGTTCTTAAGCCCCGAGTTCAGCCG TACGTCACTGGTTGGTATTGTGAAAGACATAAGGGCATCCATGCTTGAAGAAGTTGACTTTACCAAGGAGGCTGCGAACATTGAATCCTTTAGAAGATAT TTAGAATCAATGGGACTCACAAGACAAGCCACAGCTCCAAAAGTATATCACCATTGCAGCAGCCGCAGAGTTCTGACGATGGAGAGACTATATGGAGTGC CACTTACTGATCTAGACTCTATAAGCTCCCTTGTGGCCGATCCGGAAGCAAGCCTCATTACTGCTCTTAATGTTTGGTTTGGTAGTCTTCTTGCATGTGA AAGTTTCCATGCAGATGTACATGCAGGAAACCTGTGGTTGCTGCGCGATGGTCGGATCGGATTTCTTGATTTTGGTGCTATCTTTCTAAACAAAAGTAAC TTCTGGTATCCAGGAATCGTTGGACGCATATCCCCAAAGACATGGGAAGCAATGGAAGTGTTTCTAGGATCAATTACAACCGAAGAATACGAATCAATGG CTTCTGCACTGACTGAGATGGGTGCTACAAACAAAAGCGACATGGACACCGAAATAGTAGTGGCAACAGCAAGAGATGGCAGTACAAATGCAACTGCTGT CGCTGCCAATGTGATGGTCGACGAAAGGCAAATGAATGCGCTTTTTCTCGATGTGGTACGGGTCAGCGAATCGTACGGACTCAGATTTCCCAGGGAGTTT GCACTTCTCCTGAAGCAACTCCTGTATTTCGACCGGTACACACGTTTGCTAGCACCAAACATGAACATGCTTCAGGACCAAAGAGTCACCATAGTCTCGA ACCGCGGAAACCGGTACAGAGACAGCAGTTTCAACTATTAA
AA sequence Show only first row Show all	>Lus10030509 pacid=23140625 polypeptide=Lus10030509 locus=Lus10030509.g ID=Lus10030509.BGIv1.0 annot-version=v1.0 MISAPALRGCSRFTFSNPFPIPCLSSYRVKLSQSSLGNKRLRSPAKPFPIFAQYSQTQSQTPFSSSRLQDSLENLPKLVEDIIQTSLNTGPRGALRFAQG VQAVVGVGSEWLQDASRSANSPGGLPVDMRLGVLSPVYLRKLFERMGATYVKLGQFVASAPTLFPPEYVEEFQKCFDRAPTIPFQEIQAILREELGRPIE AVYEYVDPTPIASASIAQVHGARLKGSQEDVVIKVLKPGIEDILVADLNFIFIIARVFEFLSPEFSRTSLVGIVKDIRASMLEEVDFTKEAANIESFRRY LESMGLTRQATAPKVYHHCSSRRVLTMERLYGVPLTDLDSISSLVADPEASLITALNVWFGSLLACESFHADVHAGNLWLLRDGRIGFLDFGAIFLNKSN FWYPGIVGRISPKTWEAMEVFLGSITTEEYESMASALTEMGATNKSDMDTEIVVATARDGSTNATAVAANVMVDERQMNALFLDVVRVSESYGLRFPREF ALLLKQLLYFDRYTRLLAPNMNMLQDQRVTIVSNRGNRYRDSSFNY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05200			Protein kinase superfamily pro...		Lus10030509 [exp]	0	1
AT5G05200			Protein kinase superfamily pro...		Lus10012865 [exp]	1.4	0.9239
AT5G24320			Transducin/WD40 repeat-like su...		Lus10032436 [exp]	3.0	0.8888
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028881 [exp]	4.9	0.9083
AT2G46100			Nuclear transport factor 2 (NT...		Lus10007918 [exp]	6.0	0.9099
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10026801 [exp]	6.5	0.8375
AT1G71040		LPR2	Low Phosphate Root2, Cupredoxi...		Lus10032443 [exp]	7.4	0.8964
AT5G05200			Protein kinase superfamily pro...		Lus10012864 [exp]	8.7	0.9018
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10040790 [exp]	9.3	0.8457
AT2G01680			Ankyrin repeat family protein ...		Lus10034579 [exp]	10.2	0.8574
AT3G50120			Plant protein of unknown funct...		Lus10009871 [exp]	10.9	0.8637

Compare expression of checked genes

Lus10030509 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.