Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40780 119 / 1e-34 Nucleic acid-binding, OB-fold-like protein (.1.2) AT2G40910 47 / 1e-06 F-box and associated interaction domains-containing protein (.1.2) AT2G04520 40 / 0.0002 Nucleic acid-binding, OB-fold-like protein (.1) AT5G35680 39 / 0.0003 Nucleic acid-binding, OB-fold-like protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029014 [exp] 163 / 5e-52 AT2G40780 199 / 4e-66 Nucleic acid-binding, OB-fold-like protein (.1.2) Lus10034249 [exp] 160 / 6e-51 AT2G40780 197 / 4e-65 Nucleic acid-binding, OB-fold-like protein (.1.2) Lus10012866 [exp] 0 / 1 AT2G40780 51 / 3e-15 Nucleic acid-binding, OB-fold-like protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G061200 [exp] 161 / 2e-51 AT2G40780 187 / 2e-61 Nucleic acid-binding, OB-fold-like protein (.1.2) Potri.014G160900 [exp] 39 / 0.0003 AT2G04520 200 / 3e-67 Nucleic acid-binding, OB-fold-like protein (.1) Potri.002G219200 [exp] 38 / 0.0009 AT2G04520 198 / 2e-66 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF01176 [flax] [poplar] eIF-1a Translation initiation factor 1A / IF-1
Representative CDS sequence Show only first row Show all	>Lus10030510 pacid=23140777 polypeptide=Lus10030510 locus=Lus10030510.g ID=Lus10030510.BGIv1.0 annot-version=v1.0 ATGAAGGCTGGAAGGAAGAATCTGAAGAGGACAGAATCAGAGGAACAAGGCTTGAAACTTGAAGATGGTCAAAGCATCATGCAGGTGTTGTCTCTCCGAG GCTCCAATCTTATCGAGGTATTGGACCTGAATGGGGACAAGTCTTTAGCTTTGTTCCTTGCTAAGTTTCAGAAGACTATGTGGATCGAGAAAGAAGTGGG AAGGCGATCTGAGTCGGGAAGCAAGGTGACTTGCATTGTTTCTCAGGTTCTCTTCCACGAACATGTCCGTACGCTTCAGAAATCGCCTGAATGGCCTGAA GTCTTCAAAACCACAACCAATGGAACCTCTGATGCAAAAGGGACAGACCAAGAAGCAAAGGATCTCGATTCAAGTGACGATGATGATGGGCTCCCGCCAC TGAAAGCCAACATGAACAGGATCCAGCCTCCATTTCTAGAAGCTGATTCAGATACAGGATTTGATTCTGATTCTTAG
AA sequence Show only first row Show all	>Lus10030510 pacid=23140777 polypeptide=Lus10030510 locus=Lus10030510.g ID=Lus10030510.BGIv1.0 annot-version=v1.0 MKAGRKNLKRTESEEQGLKLEDGQSIMQVLSLRGSNLIEVLDLNGDKSLALFLAKFQKTMWIEKEVGRRSESGSKVTCIVSQVLFHEHVRTLQKSPEWPE VFKTTTNGTSDAKGTDQEAKDLDSSDDDDGLPPLKANMNRIQPPFLEADSDTGFDSDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40780			Nucleic acid-binding, OB-fold-...		Lus10030510 [exp]	0	1
					Lus10002099 [exp]	2.4	1.0000
AT1G17930			Aminotransferase-like, plant m...		Lus10005495 [exp]	3.5	1.0000
					Lus10025316 [exp]	4.0	1.0000
					Lus10011594 [exp]	4.2	1.0000
AT5G39200			unknown protein		Lus10030710 [exp]	5.0	1.0000
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Lus10033233 [exp]	6.3	1.0000
AT4G17920			RING/U-box superfamily protein...		Lus10030972 [exp]	6.5	1.0000
AT2G42850		CYP718	"cytochrome P450, family 718",...		Lus10031391 [exp]	7.0	1.0000
AT1G61290		ATSYP124, SYP12...	syntaxin of plants 124 (.1)		Lus10006735 [exp]	7.9	1.0000
AT5G53820			Late embryogenesis abundant pr...		Lus10003056 [exp]	8.1	0.8712

Compare expression of checked genes

Lus10030510 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.