Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40770 442 / 1e-138 zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding (.1) AT5G43530 97 / 2e-20 Helicase protein with RING/U-box domain (.1) AT5G22750 96 / 4e-20 RAD5A, RAD5 DNA/RNA helicase protein (.1) AT1G05120 90 / 2e-18 Helicase protein with RING/U-box domain (.1) AT1G02670 81 / 1e-15 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G05130 77 / 2e-14 DNA/RNA helicase protein (.1) AT1G50410 74 / 2e-13 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT1G11100 70 / 3e-12 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2) AT3G20010 69 / 8e-12 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT2G46020 69 / 8e-12 CHA2, ATBRM, CHR2, BRM CHROMATIN REMODELING 2, ARABIDOPSIS THALIANA BRAHMA, transcription regulatory protein SNF2, putative (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012867 [exp] 696 / 0 AT2G40770 1843 / 0.0 zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding (.1) Lus10043365 [exp] 99 / 3e-21 AT5G22750 1445 / 0.0 DNA/RNA helicase protein (.1) Lus10041156 [exp] 90 / 2e-18 AT5G43530 1222 / 0.0 Helicase protein with RING/U-box domain (.1) Lus10030044 [exp] 89 / 6e-18 AT1G05120 1047 / 0.0 Helicase protein with RING/U-box domain (.1) Lus10039001 [exp] 88 / 8e-18 AT5G05130 1002 / 0.0 DNA/RNA helicase protein (.1) Lus10019523 [exp] 72 / 1e-13 AT5G22750 257 / 3e-79 DNA/RNA helicase protein (.1) Lus10027296 [exp] 72 / 3e-13 AT5G05130 470 / 1e-159 DNA/RNA helicase protein (.1) Lus10041008 [exp] 72 / 1e-12 AT1G50410 1060 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10018465 [exp] 72 / 1e-12 AT1G61140 546 / 2e-175 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G060900 [exp] 495 / 6e-158 AT2G40770 1921 / 0.0 zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding (.1) Potri.019G060000 [exp] 319 / 2e-104 AT2G40770 414 / 4e-133 zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding (.1) Potri.019G060126 [exp] 319 / 2e-104 AT2G40770 414 / 4e-133 zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding (.1) Potri.019G060210 [exp] 279 / 3e-90 AT2G40770 292 / 4e-91 zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding (.1) Potri.019G060300 [exp] 267 / 2e-84 AT2G40770 360 / 6e-114 zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding (.1) Potri.004G189400 [exp] 97 / 1e-20 AT5G22750 1506 / 0.0 DNA/RNA helicase protein (.1) Potri.014G154600 [exp] 91 / 8e-19 AT1G05120 1058 / 0.0 Helicase protein with RING/U-box domain (.1) Potri.003G083400 [exp] 88 / 7e-18 AT5G43530 1342 / 0.0 Helicase protein with RING/U-box domain (.1) Potri.016G033700 [exp] 75 / 8e-14 AT5G05130 710 / 0.0 DNA/RNA helicase protein (.1) Potri.006G035700 [exp] 73 / 4e-13 AT5G05130 1117 / 0.0 DNA/RNA helicase protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10030512 pacid=23140698 polypeptide=Lus10030512 locus=Lus10030512.g ID=Lus10030512.BGIv1.0 annot-version=v1.0 ATGTCAGGGTGTTTTGATGGGCCGGATGAGGGTGTTTCTGGCCTTGGTCACTTGATAAGATTGAAGATTTTGACATTAAGGCCAGTTTTGGGGTCATATT CGGAGGGTGTGATGACAGTGAGGATGAGGGTTGAGGTGTTCAAGGATGCTCTTGATGCTTGTGAATCACTTCTGGAGAATAACAGACAGGACTGGAAGAA AAGTATGATGGATGTGATGGGTTGGCTTCGACCAGAAGTCATGATCTCAGAGGCTAGATATGGAGTGACTAGTAGATCAATGGAGATTGACGATGATGGT TCTACCTCCAGGAAGCGTGCGGGGTTTGATGTTGCTGAATTTTATGAAGCAATTAAGCCATCAAAATCAGAGCCGATGCTTGAAGATGACTTGCCTGACT TGGTTCCAGTACTTAGACCCTATCAGCGGCGTGCAGCATACTGGATGGTGGAAAGAGAGAAAGGGGATAGTCTTGATGAAAATGCAAAAAGTGACTTCTT TTCTCCTCTGAGTTTGTCTGTGAATTTCCTTGATTCATGCACAAGAATGTTCTACAATCCATTCAGTGGCAATATTTCGCTACAGCCTGAAAGCTCTGCA CCACCCATCTTTGGTGGGATTCTTGCTGGTAAAGATCCACTGTTTACTTCCTCTCTAAGCATGAGGAAGGAGTACAGTTCTGCAAGGTCGCTGGCTGTTA CTCAAGCTCAGTTTCTGCGTGCTCATGACGAAATTAGGATAGCAACAACGAGACTGCATCTAAGAGAGGACGAGAATGATAATTCTCTCGACGCATTAGG TCCAGAGGAACTCGATACAGCTAGTGTGCTGCAATCTAGTGACAAGTTCTTGGCTCTGACTTCTTTGTCGAGCATTAAAGGAAAACTACGTTACTTGAAG GGTTTGATGCAATCAAAACAGAAAGCACCTTCTGATAGTTCAAATAACTTGTTATCGAAAACTCAAGAAACAACCTTGGTGTCGGTATCGACAGACACGA GAAATGACGTTCTACCTAAAGATGACGAAGAAGCATGCCCTATCTGTCATGAAAAGCTAAGCGATGAAAAGATGGTCTTCCAATGCGGGCACTTTATTTG CTGTAAATGCTTATTGGCGATGACAGAACCGAAAGAGCCTCAGGATCGCAAGTTCCAGTTGCTAAAATGGGTGATGTGCCCAACATGTCGACAGCATACC GATTATCGGAATATTGCTTATGTCGGCGACAGAAAAGGCAAAAAATCCTCGAATCCGGGTAATCTGTCAACAACACAAGATTCCTTGAGGGGCGAAGCAT CCTTGATTGTCCACGGTTCGTATGGTACTAAGCTCGAAGCTGTGACACGAAGAATACTGTTGATAAAATCCTCGGATTCCAACGCCAAAGTTCTTGTGTT CTCGAGCTGGAACGATGTCCTGGATGTATTAGAACATGCTTTCAAGGCGAACAGGATAACGTATATCCGAATGAAAGGTGGCAGGAAATCACATGATGCC ATTAGTGAGTTTAGAGGGCAGAACAAGAAAAAGGCAGAATCGATCCAAGTTCTATTGCTGTTGATTCAACATGGAGCTAACGGACTTAATCTGTTGGAAG CACAGCATGTTGTGCTTGTTGAGCCATTGCTGAATCCAGCTGCAGAAGCACAAGCAATCAGCAGAGTGCACAGAATCGGGCAGGATAAGAGGACGCTCGT GCATCGATTCATAAGACATACACCAACTGAACAGGAGCAGGAACACGAAATCATTCGTGAGTGGGAACACGAAGAACCAAGATCAGCCTGTTTTGACGCT GAAAGATGTCGAGTCTCTCTTTGCCTCTTCTTCTTCAAACACCCCTCGCCCCCAGGCAGGGCAGCTGCCATGGCAGCTGAGAGGAGACTGATGGAGAATG GAATCTCAAGTTCTGCAGCTCTATAA
AA sequence Show only first row Show all	>Lus10030512 pacid=23140698 polypeptide=Lus10030512 locus=Lus10030512.g ID=Lus10030512.BGIv1.0 annot-version=v1.0 MSGCFDGPDEGVSGLGHLIRLKILTLRPVLGSYSEGVMTVRMRVEVFKDALDACESLLENNRQDWKKSMMDVMGWLRPEVMISEARYGVTSRSMEIDDDG STSRKRAGFDVAEFYEAIKPSKSEPMLEDDLPDLVPVLRPYQRRAAYWMVEREKGDSLDENAKSDFFSPLSLSVNFLDSCTRMFYNPFSGNISLQPESSA PPIFGGILAGKDPLFTSSLSMRKEYSSARSLAVTQAQFLRAHDEIRIATTRLHLREDENDNSLDALGPEELDTASVLQSSDKFLALTSLSSIKGKLRYLK GLMQSKQKAPSDSSNNLLSKTQETTLVSVSTDTRNDVLPKDDEEACPICHEKLSDEKMVFQCGHFICCKCLLAMTEPKEPQDRKFQLLKWVMCPTCRQHT DYRNIAYVGDRKGKKSSNPGNLSTTQDSLRGEASLIVHGSYGTKLEAVTRRILLIKSSDSNAKVLVFSSWNDVLDVLEHAFKANRITYIRMKGGRKSHDA ISEFRGQNKKKAESIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQDKRTLVHRFIRHTPTEQEQEHEIIREWEHEEPRSACFDA ERCRVSLCLFFFKHPSPPGRAAAMAAERRLMENGISSSAAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40770			zinc ion binding;DNA binding;h...		Lus10030512 [exp]	0	1
AT3G23700			Nucleic acid-binding proteins ...		Lus10021484 [exp]	6.9	0.7955
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10037616 [exp]	11.2	0.7747
AT2G30320			Pseudouridine synthase family ...		Lus10026423 [exp]	13.0	0.7873
AT1G74600		OTP87	organelle transcript processin...		Lus10002054 [exp]	20.9	0.7763
AT4G00490		BAM2, BMY9	BETA-AMYLASE 9, beta-amylase 2...		Lus10037846 [exp]	25.5	0.7016
					Lus10025603 [exp]	29.1	0.7374
AT1G72200			RING/U-box superfamily protein...		Lus10028454 [exp]	29.2	0.6987
AT1G52630			O-fucosyltransferase family pr...		Lus10026792 [exp]	29.4	0.7389
AT2G03510			SPFH/Band 7/PHB domain-contain...		Lus10037073 [exp]	29.7	0.7459
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Lus10000912 [exp]	30.3	0.7725

Compare expression of checked genes

Lus10030512 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.