Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09060 719 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 307 / 1e-93 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 273 / 3e-81 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G06920 275 / 9e-81 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74580 269 / 1e-79 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59900 256 / 9e-74 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 249 / 2e-73 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62910 249 / 3e-73 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G20090 247 / 2e-72 EMB1025 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63330 245 / 2e-72 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006373 [exp] 272 / 1e-80 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010410 [exp] 273 / 9e-80 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 269 / 2e-79 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038974 [exp] 266 / 7e-79 AT1G74580 911 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012139 [exp] 263 / 3e-76 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038377 [exp] 257 / 7e-76 AT4G20090 841 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 258 / 1e-75 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010407 [exp] 260 / 3e-75 AT5G59900 981 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 258 / 3e-75 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G111600 [exp] 872 / 0 AT3G09060 860 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G234500 [exp] 291 / 8e-88 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G013300 [exp] 287 / 3e-86 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 285 / 5e-86 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 271 / 7e-81 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G236800 [exp] 265 / 6e-77 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G105400 [exp] 266 / 9e-77 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G015900 [exp] 259 / 3e-76 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G105600 [exp] 258 / 1e-75 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050300 [exp] 254 / 4e-75 AT1G12700 466 / 5e-156 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10030513 pacid=23140667 polypeptide=Lus10030513 locus=Lus10030513.g ID=Lus10030513.BGIv1.0 annot-version=v1.0 ATGCTAGAAATTCAAAAGCTTCCCGAAACCCTCTCTTCCAAACTCCTTGTAAAGCTTCTGAAATTCGAGAAAACCCCTAAATTGAAGCTTGCGCTTTTCG ATTCAGCGGTTCGCCGCCCCGATTACAAGCCGTCAGTTCACGTCATCCACCACATCTTGCAGCATCTCTCCGATTCAGATCATGTCCCCCACGTTTCCCG CGTCGTCGAGCTCGTGGAAACCCGTAGGTACAAGTGTCCCGAAGACGTTGCTCTGACGGTAATCAAGGCTTATTCCAAGAACAAAATGGTGTCGGAAGCT TTACTCACTTTCAAACGAATGGAGGAGATTTTCCAGTGCAGGCCGGGGATTCGGTCGTATAACACAATGCTTAATGCATTTGTTGAGTCGGAGCAGTGGA AGAAGGCGGAGGAGTTTCTAGCTTATTTTGAAACGGTGGGTATAGCTTCTAATTTGGAAACTCACAACGTTCTGATTAAGATTCTGTGCAAGAAGAGGCA ATTTAGCAAGGCGATGGAATTGTTGGATGGAATGTGGGAGAAAGGGTTTAAGCCAGATGTGTATAGCTATAGCACTGTCATGATTGGAATGGTCAGAGAA AGGGATTTGGTGAATGCATCCCAGGTGTTCGACGAAATGCTTGCAAGAGGAGTGGTGCCTGATGTCACGTGTTATAATATAATCATCGATGGGTTTTTCA AGATCGGTGATTATAAGAAAGCGAACGCTATCTGGGAGAAATTGGTGACAAGTTCTGTAGTCTATCCTAGTGTAGCTAGTTATAACATTATGATTGATGG CCTGTGCAAGTGTGGGAAGTTGGATGAGAGTTTGCAACTGTGGGAGAGAATGAAGAGCAATGAGCGGGAAAGGGATATGGTTACTTGCAGTAGCTTGATA GGTGGGTTGTGTAAGGTTGGGAAAACTGATGGAGCTCTAAAGGTGTACAGGGAGATTGTAGATAGTGGAATGGTCATTGATGTTGTTACTCATAACGCAA TGCTCGATGGACTTTGCAAGGCTGGGAGGATAAACGAGTGTTTCGAATTGTGGTTGGCAATGGGGAAGCAAGGTTGTCGTAATGTCGTCAGTTATACCAT TTTAATCAAAGGTTTGCTGGAGAACAGAAAGGTCGAGGAAGCCATGTCTGTGTGGGAAATTCTTCGTAAGAAGGATTGCGGGCCTGATTCTGTAATGTAT GGAGTTTTGATTCACGGTTTGTGTAAGAACGGCTTCTTGAATAAAGCCTTAAAGCTTCTCGCCGAGGCTGAAGATGGGAATGTTGAAGAACTGGATGCTT TTGCATATTCATCAATGGTGGATGGATTATGCAAAGAAGGCAGAGTGGATGAAGCAATGAGCATCATCAATCGGATTGGGCTAAATCCTTTCTTTTTCAA CCCAGTCATTAATAGCTTTGTACAAGCTTCAAAACTAGAGAAGGCAATTGAGTTTTTCAGGGAAATGGAATCAAAGGGCTGCTCCCCTACTGTCGTCTCG TATAATACCCTCATAAAGGGCCTATGCAAAGCAGAAAGGTACACCGAGGCGTATTCTTTCGTGAAGGAAATGCTGGATAAGAAATGGAAGCCGGACATGA TCACTTACACTCTGTTGCTGGACGGGCTTTGTCAAGGGAAGAAGATCGACGAGGCTCTCAGTCTTTGGCGGCTTGTTCTTAACAGCGGCTTTAAGCCGGA TCTTATAATGCACAACATTCTGATGCACGGACTTTGCTCCGCAGGGAGAATCTCTGACGCTGTAAGATTCTCAAAAGAGATGAAGCTATGTTCATGTGTT CCTAATCTTGTTACGTACAACACTCTCATGGAAGGCTTTTTTAAGCTTAGAGGACGCCAAGAGGCCTTTGCAATATGGGGATGTATTTTAAGAAGAGGGT TACAGCCAGATATCATCTCGTATAACATTGCGCTTAAGGGGCTTTGTTCTTGTGGCAGAGTATCTGATGCTGTCAGGTTTTTGGACGATGCTCTGAAGAA TGGAACGAATCCGAGTCGTGTGACGTGGAACATCCTCGTAAGGGCTGTGGTTATTGATAGGAGGAGTCCGTACATCAGTAGAGCTTGGGAAGCTTGA
AA sequence Show only first row Show all	>Lus10030513 pacid=23140667 polypeptide=Lus10030513 locus=Lus10030513.g ID=Lus10030513.BGIv1.0 annot-version=v1.0 MLEIQKLPETLSSKLLVKLLKFEKTPKLKLALFDSAVRRPDYKPSVHVIHHILQHLSDSDHVPHVSRVVELVETRRYKCPEDVALTVIKAYSKNKMVSEA LLTFKRMEEIFQCRPGIRSYNTMLNAFVESEQWKKAEEFLAYFETVGIASNLETHNVLIKILCKKRQFSKAMELLDGMWEKGFKPDVYSYSTVMIGMVRE RDLVNASQVFDEMLARGVVPDVTCYNIIIDGFFKIGDYKKANAIWEKLVTSSVVYPSVASYNIMIDGLCKCGKLDESLQLWERMKSNERERDMVTCSSLI GGLCKVGKTDGALKVYREIVDSGMVIDVVTHNAMLDGLCKAGRINECFELWLAMGKQGCRNVVSYTILIKGLLENRKVEEAMSVWEILRKKDCGPDSVMY GVLIHGLCKNGFLNKALKLLAEAEDGNVEELDAFAYSSMVDGLCKEGRVDEAMSIINRIGLNPFFFNPVINSFVQASKLEKAIEFFREMESKGCSPTVVS YNTLIKGLCKAERYTEAYSFVKEMLDKKWKPDMITYTLLLDGLCQGKKIDEALSLWRLVLNSGFKPDLIMHNILMHGLCSAGRISDAVRFSKEMKLCSCV PNLVTYNTLMEGFFKLRGRQEAFAIWGCILRRGLQPDIISYNIALKGLCSCGRVSDAVRFLDDALKNGTNPSRVTWNILVRAVVIDRRSPYISRAWEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09060			Pentatricopeptide repeat (PPR)...		Lus10030513 [exp]	0	1
AT4G18520			Pentatricopeptide repeat (PPR)...		Lus10029482 [exp]	3.3	0.8543
AT4G18520			Pentatricopeptide repeat (PPR)...		Lus10039594 [exp]	6.6	0.8352
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10020215 [exp]	7.3	0.8135
AT5G13260			unknown protein		Lus10002574 [exp]	9.6	0.8080
AT4G10620			P-loop containing nucleoside t...		Lus10035986 [exp]	13.1	0.7855
AT4G09020		ATISA3, ISA3	isoamylase 3 (.1)		Lus10036474 [exp]	14.1	0.7720
AT4G00231		MEE50	maternal effect embryo arrest ...		Lus10020777 [exp]	15.5	0.7906
AT1G15510		VAC1, ATECB2	VANILLA CREAM 1, ARABIDOPSIS E...		Lus10025009 [exp]	17.2	0.8003
AT1G09190			Tetratricopeptide repeat (TPR)...		Lus10029853 [exp]	19.0	0.7858
AT2G44530			Phosphoribosyltransferase fami...		Lus10012074 [exp]	19.3	0.7868

Compare expression of checked genes

Lus10030513 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.