Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50740 166 / 3e-49 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) AT5G63530 154 / 4e-44 ATFP3 ARABIDOPSIS THALIANA FARNESYLATED PROTEIN 3, farnesylated protein 3 (.1.2) AT3G02960 102 / 2e-25 Heavy metal transport/detoxification superfamily protein (.1) AT2G36950 72 / 8e-14 Heavy metal transport/detoxification superfamily protein (.1) AT5G03380 69 / 8e-13 Heavy metal transport/detoxification superfamily protein (.1.2) AT5G24580 61 / 3e-10 Heavy metal transport/detoxification superfamily protein (.1.2.3) AT1G29000 59 / 7e-10 Heavy metal transport/detoxification superfamily protein (.1) AT5G60800 59 / 1e-09 Heavy metal transport/detoxification superfamily protein (.1.2) AT4G38580 56 / 2e-09 HIPP26, ATFP6 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1) AT5G66110 54 / 1e-08 HIPP27 heavy metal associated isoprenylated plant protein 27, Heavy metal transport/detoxification superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012867 [exp] 251 / 9e-75 AT2G40770 1843 / 0.0 zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding (.1) Lus10038785 [exp] 107 / 3e-27 AT5G50740 183 / 6e-57 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Lus10039074 [exp] 107 / 4e-27 AT5G50740 182 / 8e-57 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Lus10015762 [exp] 90 / 9e-21 AT3G02960 151 / 3e-45 Heavy metal transport/detoxification superfamily protein (.1) Lus10037044 [exp] 83 / 2e-18 AT3G02960 137 / 6e-40 Heavy metal transport/detoxification superfamily protein (.1) Lus10021516 [exp] 76 / 3e-15 AT5G03380 202 / 2e-61 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10022617 [exp] 74 / 2e-14 AT2G36950 178 / 2e-51 Heavy metal transport/detoxification superfamily protein (.1) Lus10014421 [exp] 70 / 4e-13 AT5G03380 193 / 5e-57 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10016133 [exp] 69 / 1e-12 AT5G60800 175 / 3e-52 Heavy metal transport/detoxification superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G099500 [exp] 172 / 5e-51 AT5G50740 214 / 7e-68 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Potri.012G101400 [exp] 169 / 8e-50 AT5G63530 204 / 2e-63 ARABIDOPSIS THALIANA FARNESYLATED PROTEIN 3, farnesylated protein 3 (.1.2) Potri.016G006600 [exp] 129 / 4e-35 AT5G50740 153 / 5e-45 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Potri.006G006100 [exp] 114 / 2e-29 AT5G50740 143 / 2e-41 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Potri.016G017600 [exp] 100 / 5e-25 AT3G02960 199 / 2e-64 Heavy metal transport/detoxification superfamily protein (.1) Potri.006G124800 [exp] 75 / 6e-15 AT2G36950 135 / 2e-36 Heavy metal transport/detoxification superfamily protein (.1) Potri.016G093100 [exp] 72 / 7e-14 AT2G36950 123 / 5e-32 Heavy metal transport/detoxification superfamily protein (.1) Potri.012G007300 [exp] 69 / 4e-13 AT5G24580 251 / 5e-82 Heavy metal transport/detoxification superfamily protein (.1.2.3) Potri.015G003900 [exp] 66 / 5e-12 AT5G24580 247 / 1e-80 Heavy metal transport/detoxification superfamily protein (.1.2.3) Potri.009G007600 [exp] 65 / 1e-11 AT5G60800 157 / 1e-45 Heavy metal transport/detoxification superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10030514 pacid=23140736 polypeptide=Lus10030514 locus=Lus10030514.g ID=Lus10030514.BGIv1.0 annot-version=v1.0 ATGGGCGCCGAGGAGGAGAAGAAACCAGCGGCGGAATCGGAAGTTGAGAAAAAAACAGAGGAGGAAGAGAAAAAAACAGAGAAAGAGAAACCGGCGGACG AGAAACCGGCAGGAGAGGAGAAGAAGGAGGAGGCGGCGGAGGCGGCGCCGCCACCCCCGCCGCAGGAGATTGTGTTGAAAGTGTTCATGCATTGCGAGGG ATGCGCGCGTAAGGTGCGGCGGTGTCTGAAAGGGTTCGAGGGGGTTGAGGATGTGACGACGGACTGCAAAAGCAGCAAGGTTGTAGTGAAGGGGGAGAAA GCAGATCCGGTCAAGGTTCTGGAGAGGATACAGAGGAAGAGCCATAGGCAAGTTGAGCTCATTTCCCCTATTCCGAAACCACCTGAGGTTGAAGAAGAAC AGAAACCCAAGCCTCCTGTTGAAGAACCCAAACCTGAGCAGCCTCCACCGGCGGTGATCACAGTTGTGCTGCAGCTAGTGTGGTTGACGAGCCGAGTTGA GCCAGGGTATGATCGATTCGGCCCTGGCTCGAGGGTGGAATCGGCAGAACCGGATCTGAAGAGTTCTCAGGTGACAGTGAAGGGAGTTTTCGAAGCAGAG CAGCTGGTGGAATACGTCCGCAAACGGACAGGGAAGCAAGCTGTGATCGTGAAGCAAGAGCCGGAAAAGAAGGAAGAGAAAGCCGGCGAAGATAAAGGCA AAGAGGAATCCAAGGAGGAGGAGAAGAAAGGCGACGAACCCTCCTCCGACGACAATGCTAAGAAGGAGGAAGTAGACAAGGGGAAGCCAGCCGAGGAGAA GGAGGAGGATAAGCCGAAAAAGGAAGGAGGAGATGTCGACCCCAAAGAGGGGGCGGCTGAGCCGCCTCCGGCAGGAGAAGAGACTACTACTAAAGTGGTG GAGGTGAAGAGGAATGAGTGCTACTATTACCCACCGAGGTACGCCATGGAATTGTACGCTTACCCGCCTCAGATCTTTAGCGACGAGAATCCTAATGCTT GTGTCGTTATGTGA
AA sequence Show only first row Show all	>Lus10030514 pacid=23140736 polypeptide=Lus10030514 locus=Lus10030514.g ID=Lus10030514.BGIv1.0 annot-version=v1.0 MGAEEEKKPAAESEVEKKTEEEEKKTEKEKPADEKPAGEEKKEEAAEAAPPPPPQEIVLKVFMHCEGCARKVRRCLKGFEGVEDVTTDCKSSKVVVKGEK ADPVKVLERIQRKSHRQVELISPIPKPPEVEEEQKPKPPVEEPKPEQPPPAVITVVLQLVWLTSRVEPGYDRFGPGSRVESAEPDLKSSQVTVKGVFEAE QLVEYVRKRTGKQAVIVKQEPEKKEEKAGEDKGKEESKEEEKKGDEPSSDDNAKKEEVDKGKPAEEKEEDKPKKEGGDVDPKEGAAEPPPAGEETTTKVV EVKRNECYYYPPRYAMELYAYPPQIFSDENPNACVVM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50740			Heavy metal transport/detoxifi...		Lus10030514 [exp]	0	1
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10040808 [exp]	1.4	0.9538
AT5G20045			unknown protein		Lus10019440 [exp]	2.2	0.9513
AT5G45590			Ribosomal protein L35 (.1)		Lus10012140 [exp]	2.6	0.9503
AT4G27585			SPFH/Band 7/PHB domain-contain...		Lus10015597 [exp]	2.6	0.9551
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10035282 [exp]	3.0	0.9498
AT1G16300		GAPCP-2	glyceraldehyde-3-phosphate deh...		Lus10000872 [exp]	4.9	0.9527
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Lus10009186 [exp]	5.5	0.9451
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Lus10000148 [exp]	5.8	0.9443
AT2G34650		ABR, PID	PINOID, ABRUPTUS, Protein kina...		Lus10036150 [exp]	5.9	0.9342
AT1G04340			HR-like lesion-inducing protei...		Lus10021205 [exp]	6.9	0.9474

Compare expression of checked genes

Lus10030514 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.