Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56400 137 / 2e-38 WRKY ATWRKY70, WRKY70 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) AT2G40750 112 / 3e-28 WRKY ATWRKY54, WRKY54 WRKY DNA-binding protein 54 (.1) AT4G23810 91 / 1e-20 WRKY ATWRKY53, WRKY53 WRKY family transcription factor (.1) AT2G40740 87 / 2e-19 WRKY ATWRKY55, WRKY55 WRKY DNA-binding protein 55 (.1.2) AT2G46400 86 / 5e-19 WRKY ATWRKY46, WRKY46 WRKY DNA-binding protein 46 (.1) AT4G11070 84 / 2e-18 WRKY ATWRKY41, WRKY41 WRKY family transcription factor (.1.2) AT5G24110 81 / 4e-17 WRKY ATWRKY30, WRKY30 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 30, WRKY DNA-binding protein 30 (.1) AT5G45260 80 / 3e-16 WRKY ATWRKY52, SLH1, RRS1 SENSITIVE TO LOW HUMIDITY 1, RESISTANT TO RALSTONIA SOLANACEARUM 1, ARABIDOPSIS THALIANA WRKY DOMAIN PROTEIN 52, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT5G01900 72 / 3e-14 WRKY ATWRKY62, WRKY62 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 62, WRKY DNA-binding protein 62 (.1) AT1G66550 69 / 2e-13 WRKY ATWRKY67, WRKY67 WRKY DNA-binding protein 67 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012870 [exp] 434 / 4e-154 AT3G56400 153 / 1e-44 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10034244 [exp] 222 / 7e-71 AT3G56400 151 / 6e-44 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10029021 [exp] 212 / 6e-67 AT3G56400 149 / 3e-43 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10025216 [exp] 105 / 4e-26 AT3G56400 123 / 8e-33 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10025133 [exp] 100 / 7e-24 AT3G56400 114 / 2e-29 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10022736 [exp] 96 / 9e-23 AT5G01900 105 / 1e-26 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 62, WRKY DNA-binding protein 62 (.1) Lus10014177 [exp] 94 / 8e-22 AT3G56400 105 / 3e-26 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10001902 [exp] 87 / 3e-19 AT4G11070 210 / 6e-66 WRKY family transcription factor (.1.2) Lus10001062 [exp] 87 / 6e-19 AT4G11070 169 / 5e-50 WRKY family transcription factor (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G090300 [exp] 131 / 1e-35 AT3G56400 172 / 1e-51 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Potri.016G137900 [exp] 131 / 1e-35 AT3G56400 127 / 2e-34 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Potri.006G109100 [exp] 129 / 1e-34 AT3G56400 129 / 4e-35 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Potri.002G168700 [exp] 91 / 2e-20 AT2G46400 170 / 3e-50 WRKY DNA-binding protein 46 (.1) Potri.012G031700 [exp] 87 / 3e-19 AT5G24110 196 / 4e-60 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 30, WRKY DNA-binding protein 30 (.1) Potri.003G138600 [exp] 87 / 3e-19 AT4G11070 234 / 5e-75 WRKY family transcription factor (.1.2) Potri.014G096200 [exp] 86 / 7e-19 AT4G23810 170 / 7e-50 WRKY family transcription factor (.1) Potri.001G092900 [exp] 82 / 2e-17 AT4G11070 238 / 8e-77 WRKY family transcription factor (.1.2) Potri.013G090400 [exp] 78 / 6e-16 AT2G40740 166 / 8e-49 WRKY DNA-binding protein 55 (.1.2) Potri.003G169100 [exp] 70 / 2e-14 AT5G13080 168 / 2e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10030517 pacid=23140724 polypeptide=Lus10030517 locus=Lus10030517.g ID=Lus10030517.BGIv1.0 annot-version=v1.0 ATGGGTATGCAGGGGAACAACAAGCTGCAGCAGGAGATGGCGATGAAGGAGCTTGCTCAAGGCCATGGCTTTGCATCCCAGCTCCAACTCCTCTTCGAGA ACAGTAAAGACCATCCTGCAGCTGCAAATGAACTTGTCAACAAGATCTTGGAATCTTTCACCAGTGGCATCTCTGCTCTGAGTACTGCTGCTGCTTCTAC GGTCGCCATTAGCGACCAGGCAGGGGAGAGGCAGTCCTCTGTTTCTGGAATGTACGAGGATTCCGGCGAGAGCTGCCGGAAGAGGCCGTCGCCGGCGGCG GCGGCGGGGAAGAGTGGTGGAAGGGACAATAGAGGGTCTTACAAGAGAAGGAAGAGTGGGCACTCCGATGCAATAACCTCATCGTCGATGCAAGATGAAC ATTCGTGGAGGAAGTATGGCCAGAAGGAGATCCTCAATGCCAAATTCCCTAGGAGCTACTATAGGTGTACCCACAAGTATGACCAGGCGTGCAAGGCGAC CAGGCAAGTCCAGAGGCTTGAACAGGAAACCAAAGAGACAATGTACTCCATAACTTACATGGGCCACCACACTTGTCAGAACGCCATTAGCACGTCCCGA CAGTCGGTGAAACCTCCTTCCACAGCGATGAATGTGAAGGAAGAGATTCTTACTACGGTCAACGTAGATGATGTCAGTAACAATGTCAACAACGAAGAAA ACCCGAGTGAAGTGACGACCGAGATTAATGACAATGTAGACATGTGGATGGAGGGTTTGGGGTCATTTGATCAAGCAGAGGAGGCAATCAGTAACTATGA TTACCATCATTATAGTAACTATGGGTTCTGCGGTGATCAGAGCGGGCAAGTTTTGGATTTTGATTTCGGGGTCAAGGATATCGATTTTGAGACCGAGTTT CGGTTCGATTATCAGGAGAGTGCGTGTGGGATTTTCCCTCTAGGTAGCTAG
AA sequence Show only first row Show all	>Lus10030517 pacid=23140724 polypeptide=Lus10030517 locus=Lus10030517.g ID=Lus10030517.BGIv1.0 annot-version=v1.0 MGMQGNNKLQQEMAMKELAQGHGFASQLQLLFENSKDHPAAANELVNKILESFTSGISALSTAAASTVAISDQAGERQSSVSGMYEDSGESCRKRPSPAA AAGKSGGRDNRGSYKRRKSGHSDAITSSSMQDEHSWRKYGQKEILNAKFPRSYYRCTHKYDQACKATRQVQRLEQETKETMYSITYMGHHTCQNAISTSR QSVKPPSTAMNVKEEILTTVNVDDVSNNVNNEENPSEVTTEINDNVDMWMEGLGSFDQAEEAISNYDYHHYSNYGFCGDQSGQVLDFDFGVKDIDFETEF RFDYQESACGIFPLGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10030517 [exp]	0	1
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10012870 [exp]	1.0	0.9529
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10014177 [exp]	1.4	0.9386
AT3G50310		MKKK20, MAPKKK2...	MAPKK kinase 20, mitogen-activ...		Lus10026894 [exp]	2.4	0.8864
AT3G27540			beta-1,4-N-acetylglucosaminylt...		Lus10035231 [exp]	5.3	0.8796
AT5G02290		NAK	Protein kinase superfamily pro...		Lus10003972 [exp]	7.4	0.8785
AT3G16720		ATL2	TOXICOS EN LEVADURA 2 (.1)		Lus10037490 [exp]	10.2	0.8574
					Lus10009425 [exp]	10.6	0.7668
AT4G32030			unknown protein		Lus10001935 [exp]	10.7	0.8717
					Lus10039441 [exp]	12.4	0.8340
AT5G57910			unknown protein		Lus10036591 [exp]	12.6	0.8350

Compare expression of checked genes

Lus10030517 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.