Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24550 480 / 4e-165 BGLU32 beta glucosidase 32 (.1) AT3G60140 465 / 1e-158 BGLU30, SRG2, DIN2 SENESCENCE-RELATED GENE 2, DARK INDUCIBLE 2, BETA GLUCOSIDASE 30, Glycosyl hydrolase superfamily protein (.1) AT2G44470 456 / 7e-155 BGLU29 beta glucosidase 29 (.1.2.3) AT5G24540 452 / 2e-154 BGLU31 beta glucosidase 31 (.1) AT2G44460 449 / 3e-152 BGLU28 beta glucosidase 28 (.1) AT2G32860 449 / 9e-152 BGLU33 beta glucosidase 33 (.1.2) AT3G60120 445 / 2e-151 BGLU27 beta glucosidase 27 (.1) AT2G44480 441 / 5e-150 BGLU17 beta glucosidase 17 (.1.2) AT5G44640 440 / 8e-150 BGLU13 beta glucosidase 13 (.1) AT2G44450 439 / 2e-149 BGLU15 beta glucosidase 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012871 [exp] 944 / 0 AT5G24550 466 / 1e-157 beta glucosidase 32 (.1) Lus10012869 [exp] 916 / 0 AT5G24550 467 / 4e-160 beta glucosidase 32 (.1) Lus10012868 [exp] 888 / 0 AT5G24550 435 / 1e-145 beta glucosidase 32 (.1) Lus10030577 [exp] 881 / 0 AT5G24550 461 / 2e-157 beta glucosidase 32 (.1) Lus10030911 [exp] 848 / 0 AT5G24550 475 / 1e-163 beta glucosidase 32 (.1) Lus10030516 [exp] 842 / 0 AT2G44480 476 / 4e-164 beta glucosidase 17 (.1.2) Lus10039513 [exp] 831 / 0 AT2G44480 472 / 3e-162 beta glucosidase 17 (.1.2) Lus10024152 [exp] 814 / 0 AT5G24550 479 / 1e-164 beta glucosidase 32 (.1) Lus10011828 [exp] 756 / 0 AT2G44480 438 / 4e-146 beta glucosidase 17 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G015100 [exp] 523 / 0 AT5G44640 553 / 0.0 beta glucosidase 13 (.1) Potri.004G040700 [exp] 519 / 0 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.T085301 [exp] 501 / 1e-173 AT5G44640 575 / 0.0 beta glucosidase 13 (.1) Potri.003G211100 [exp] 500 / 2e-173 AT5G44640 569 / 0.0 beta glucosidase 13 (.1) Potri.005G059500 [exp] 498 / 5e-172 AT3G60120 517 / 8e-180 beta glucosidase 27 (.1) Potri.001G223300 [exp] 479 / 3e-165 AT2G44480 529 / 0.0 beta glucosidase 17 (.1.2) Potri.001G222904 [exp] 478 / 1e-164 AT2G44480 531 / 0.0 beta glucosidase 17 (.1.2) Potri.001G222900 [exp] 478 / 2e-164 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2) Potri.001G222704 [exp] 477 / 3e-164 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2) Potri.004G109166 [exp] 475 / 2e-163 AT5G42260 525 / 0.0 beta glucosidase 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00232 [flax] [poplar] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Lus10030518 pacid=23140542 polypeptide=Lus10030518 locus=Lus10030518.g ID=Lus10030518.BGIv1.0 annot-version=v1.0 ATGGCTCTCGTAGTGATGACGATCATGTTTATAGTGGCAGCCGCTAGCTCCGAGCTACGGATGGTATTAGCTGATGATCATGATCCTTGCTCAGCCTCGG CCTACGTATACAAACCCTCGCCGGAGCTTCCCAAGGGCCGGTTTGAGTTCCCCGATGACTTTATCTTCGGCACTGCCACTTCTTCCTATCAGATTGAGGG AGCTCATGATTTCACCTATGGAAAAGGTCCCAGCATCTGGGATAGGTTTACTCATAACTTCCCAGATAGGATTCTAGGAGGTGGTAATGGAGATATCGCA TTAGATCATTATCACAAGTACATGGAGGATATAAAGAGGATGAAATATTTGAATGTAGATGCATACAGATTCTCCATCTCGTGGCCTCGAATCATACCAT CTGGCAAGAAAAGTGACGGAGTAAATCAAGAAGGAATTGACTTTTACCACACTCTCCTCGACGCACTCATTCGAAATGGAATCAAACCTTTTGTGACAAT GTATCATTGGGAAACCCCACAAGGTCTTGAAGCTGAGTATGGTGGCTTCCTCAGTCACGACATTGTGAAGGACTTTGAGGATTACAGTGATCTCTTGTTT CAAGAATATGGTTCAAAAGTATATAAATGGATAACTTTAAACGAACCAATGGGTAACTCGATGAAGTCCTACGATGAAGGGGTTTTTGCACCAGGGCATT GTTCTGTATGGGTAAATAGAAAATGTCAACTTGGAGACTCATCAACCGAACCTTACATTGTTACTCATAATCAACTTCTTGCTCATTCCGCTGCTTACCA CTTGTACAAAAACAACTACACGCATCTAATTGCCGAAATAGGAATAACTCTTGTCACACATTGGTTTATTCCTTACGATAATTCATCATCTGAAGACATT AAGGCTGCCGAAAGAGCTTTAGACTGGCTGTATGGCTGGTACATGGATCCACTCACCTATGGTCACTACCCTAGCACTATGGTACAATTATTGGGATCTC GATTACCAAACTTCACAGACGAGGAGTCACAGTTGCTTAAGAAATCCTATGATTTTTTAGGCCTCAATTATTACACTGGTTATTATGTCAGGAACGTTAA TGATGATGATTTTGATCGAGTTCATCTTCGATATGCAACTGATCACCATGGCATTACTACACCCGACAGAGACGGGGAGTACATTGGACCACATTTGGGT TCATACTGGCAATATCTATATCCTGAAGGTCTACGAGCGCTATTAGAGCACACTACGGCAAAATATGAGGATCCCGTCATCTACATAACAGAGAATGGGT TATCGGAGAAGGACAACGCTACAAAGACACTTGAAGAGGCACTACAGGACCAGATGAGGATTGATTTTTACAACAGTCATCTTACAAGTGTTAAGCAAGC CATGACTGAGAGCCATGTGAATGTGAAAGGATACTTTGCATGGTCGTATGCCGACAACTTCGAATGGAACGAGGGATACACAGTCAGGTTTGGGTTGTAC TACGTCAACTACACTGATCTCTCCAGGCACCCAAAGAACTCTGCTTGTTGGTTCACCAGTTTCGCCAACAAGACCAGTCCCCAGTCCTCATTATTTAACT ATTTCGATCTCGATCAGCTCATCGCTGCACGTGCTGCTCTTGGAGGTCGTCGGGCTCTCTCCTCCGCTGGCCGCCTTTAG
AA sequence Show only first row Show all	>Lus10030518 pacid=23140542 polypeptide=Lus10030518 locus=Lus10030518.g ID=Lus10030518.BGIv1.0 annot-version=v1.0 MALVVMTIMFIVAAASSELRMVLADDHDPCSASAYVYKPSPELPKGRFEFPDDFIFGTATSSYQIEGAHDFTYGKGPSIWDRFTHNFPDRILGGGNGDIA LDHYHKYMEDIKRMKYLNVDAYRFSISWPRIIPSGKKSDGVNQEGIDFYHTLLDALIRNGIKPFVTMYHWETPQGLEAEYGGFLSHDIVKDFEDYSDLLF QEYGSKVYKWITLNEPMGNSMKSYDEGVFAPGHCSVWVNRKCQLGDSSTEPYIVTHNQLLAHSAAYHLYKNNYTHLIAEIGITLVTHWFIPYDNSSSEDI KAAERALDWLYGWYMDPLTYGHYPSTMVQLLGSRLPNFTDEESQLLKKSYDFLGLNYYTGYYVRNVNDDDFDRVHLRYATDHHGITTPDRDGEYIGPHLG SYWQYLYPEGLRALLEHTTAKYEDPVIYITENGLSEKDNATKTLEEALQDQMRIDFYNSHLTSVKQAMTESHVNVKGYFAWSYADNFEWNEGYTVRFGLY YVNYTDLSRHPKNSACWFTSFANKTSPQSSLFNYFDLDQLIAARAALGGRRALSSAGRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10030518 [exp]	0	1
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10012868 [exp]	1.4	0.9715
AT2G44450		BGLU15	beta glucosidase 15 (.1)		Lus10030515 [exp]	1.4	0.9697
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10002777 [exp]	2.4	0.9280
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10012871 [exp]	2.4	0.9538
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10031063 [exp]	3.5	0.9451
AT2G21140		ATPRP2	proline-rich protein 2 (.1)		Lus10042392 [exp]	3.9	0.9412
AT1G11340			S-locus lectin protein kinase ...		Lus10030768 [exp]	4.7	0.8621
AT4G01950		ATGPAT3, GPAT3	glycerol-3-phosphate acyltrans...		Lus10001449 [exp]	5.2	0.9134
AT4G36850			PQ-loop repeat family protein ...		Lus10016795 [exp]	6.8	0.8498
AT5G43700	AUX_IAA	IAA4, ATAUX2-11	indole-3-acetic acid inducible...		Lus10018764 [exp]	7.0	0.9270

Compare expression of checked genes

Lus10030518 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.