Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011549 [exp] 107 / 4e-27 AT5G67620 90 / 1e-20 unknown protein Lus10030905 [exp] 100 / 2e-24 ND 40 / 0.005 Lus10017218 [exp] 77 / 1e-16 AT4G14103 45 / 5e-05 F-box/RNI-like superfamily protein (.1.2) Lus10037289 [exp] 61 / 6e-11 AT5G02920 61 / 4e-10 F-box/RNI-like superfamily protein (.1) Lus10029083 [exp] 56 / 3e-09 AT1G67390 54 / 6e-08 F-box family protein (.1) Lus10029003 [exp] 53 / 4e-08 AT3G49030 57 / 3e-08 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Lus10019266 [exp] 51 / 9e-08 ND / Lus10042272 [exp] 48 / 1e-06 AT4G03220 65 / 4e-11 Protein with RNI-like/FBD-like domains (.1) Lus10003696 [exp] 47 / 2e-06 AT3G51530 52 / 1e-07 F-box/RNI-like/FBD-like domains-containing protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030519 pacid=23140669 polypeptide=Lus10030519 locus=Lus10030519.g ID=Lus10030519.BGIv1.0 annot-version=v1.0 ATGGCTATGATGAAAGAACTGGCCAAAATATTATCAACTACTAGCGTGACTCGGAAAACAAAGGCTATAAGAAATTTTTGTTCCAAAAGCTATAAGAACT CGCCAGAGGAAGCTGCCAGAACTTCCGCGCTGTCAAGAATATGGCACCGCCTTATCTGGCGCTCTTACCCTGTCGTCGAGTATCGCAATTCGGAATCTGA TTATAAGCTTCTCGATCAAGATCGATACTGGATCAAACCCGGATTGCAAACCAAGATTGAGAGCTTCGTGGCCTCCACCACCAAGAGACTAGGGAGCTAC CTCATCCATAACAGGACACCGTTATCCGCATCCGAGGTCTTATTCTATGACGGATCAAAGGTCAGTGAGCTCCTTCACGAGTTCTTGGGATCGGTATCTT TTTCTTCCAAAATATGTGGATCGCCTTTGGAAATATCGATTAGGAACCGTGATCGGTACAACTACATCCTGCCAGATTCAATATTGCGGAATTGCAGCCG CACTCGAGCTCTCAGACTCGAAGGATACTCGTTGGAAGGATTTTCAAATTCCGATTTTCGATTCGAACTTGATGTTTATTGA
AA sequence Show only first row Show all	>Lus10030519 pacid=23140669 polypeptide=Lus10030519 locus=Lus10030519.g ID=Lus10030519.BGIv1.0 annot-version=v1.0 MAMMKELAKILSTTSVTRKTKAIRNFCSKSYKNSPEEAARTSALSRIWHRLIWRSYPVVEYRNSESDYKLLDQDRYWIKPGLQTKIESFVASTTKRLGSY LIHNRTPLSASEVLFYDGSKVSELLHEFLGSVSFSSKICGSPLEISIRNRDRYNYILPDSILRNCSRTRALRLEGYSLEGFSNSDFRFELDVY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10030519 [exp]	0	1
AT1G63060			unknown protein		Lus10001796 [exp]	2.8	0.8087
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10003867 [exp]	3.3	0.6821
AT1G63060			unknown protein		Lus10002567 [exp]	4.0	0.8087
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10001886 [exp]	6.0	0.7821
					Lus10041320 [exp]	7.1	0.7837
AT5G45840			Leucine-rich repeat protein ki...		Lus10007281 [exp]	8.4	0.7499
AT4G29035			Plant self-incompatibility pro...		Lus10019767 [exp]	9.2	0.7254
AT3G22060			Receptor-like protein kinase-r...		Lus10022286 [exp]	10.0	0.7095
AT4G35420		TKPR1, DRL1	tetraketide alpha-pyrone reduc...		Lus10006141 [exp]	10.1	0.7335
AT2G20710			Tetratricopeptide repeat (TPR)...		Lus10029335 [exp]	13.5	0.6564

Compare expression of checked genes

Lus10030519 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.