Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09260 261 / 8e-84 LEB, BGLU23, PSR3.1, PYK10 LONG ER BODY, Glycosyl hydrolase superfamily protein (.1) AT3G60140 261 / 2e-83 BGLU30, SRG2, DIN2 SENESCENCE-RELATED GENE 2, DARK INDUCIBLE 2, BETA GLUCOSIDASE 30, Glycosyl hydrolase superfamily protein (.1) AT2G44470 252 / 5e-82 BGLU29 beta glucosidase 29 (.1.2.3) AT2G44480 256 / 6e-82 BGLU17 beta glucosidase 17 (.1.2) AT5G42260 254 / 1e-81 BGLU12 beta glucosidase 12 (.1) AT2G25630 253 / 2e-81 BGLU14 beta glucosidase 14 (.1) AT2G44450 253 / 3e-81 BGLU15 beta glucosidase 15 (.1) AT5G24550 253 / 6e-81 BGLU32 beta glucosidase 32 (.1) AT5G44640 252 / 9e-81 BGLU13 beta glucosidase 13 (.1) AT5G25980 248 / 2e-79 BGLU37, TGG2 BETA GLUCOSIDASE 37, glucoside glucohydrolase 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030515 [exp] 572 / 0 AT2G44450 281 / 4e-89 beta glucosidase 15 (.1) Lus10012868 [exp] 513 / 2e-180 AT5G24550 435 / 1e-145 beta glucosidase 32 (.1) Lus10030518 [exp] 498 / 3e-176 AT5G24550 485 / 3e-167 beta glucosidase 32 (.1) Lus10012871 [exp] 497 / 7e-174 AT5G24550 466 / 1e-157 beta glucosidase 32 (.1) Lus10012869 [exp] 469 / 1e-164 AT5G24550 467 / 4e-160 beta glucosidase 32 (.1) Lus10030577 [exp] 463 / 1e-162 AT5G24550 461 / 2e-157 beta glucosidase 32 (.1) Lus10011828 [exp] 459 / 2e-158 AT2G44480 438 / 4e-146 beta glucosidase 17 (.1.2) Lus10030516 [exp] 450 / 2e-157 AT2G44480 476 / 4e-164 beta glucosidase 17 (.1.2) Lus10030576 [exp] 444 / 1e-156 AT2G44480 400 / 6e-136 beta glucosidase 17 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G040700 [exp] 282 / 2e-92 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.001G225812 [exp] 268 / 1e-89 AT5G24550 310 / 2e-102 beta glucosidase 32 (.1) Potri.001G225808 [exp] 265 / 2e-85 AT3G60130 475 / 1e-163 beta glucosidase 16 (.1.2.3) Potri.T085301 [exp] 265 / 2e-85 AT5G44640 575 / 0.0 beta glucosidase 13 (.1) Potri.001G226100 [exp] 265 / 2e-85 AT3G60130 476 / 6e-164 beta glucosidase 16 (.1.2.3) Potri.005G059500 [exp] 265 / 2e-85 AT3G60120 517 / 8e-180 beta glucosidase 27 (.1) Potri.003G211100 [exp] 264 / 3e-85 AT5G44640 569 / 0.0 beta glucosidase 13 (.1) Potri.001G015100 [exp] 261 / 5e-84 AT5G44640 553 / 0.0 beta glucosidase 13 (.1) Potri.001G227400 [exp] 251 / 8e-81 AT2G44480 513 / 3e-180 beta glucosidase 17 (.1.2) Potri.001G227300 [exp] 247 / 8e-79 AT2G44480 585 / 0.0 beta glucosidase 17 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00232 [flax] [poplar] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Lus10030520 pacid=23140598 polypeptide=Lus10030520 locus=Lus10030520.g ID=Lus10030520.BGIv1.0 annot-version=v1.0 ATGGCTCGAGCAATTGTAGTGATGATGTTTCTGCTGGTGGCAGCTGGTAGCCCTCTGATATTAGCTGATGGTGATCCTTGCTCAGCCTCGACCTACGTAT ACAAACCCTCGCCGGAGCTCCCCAAGGGCCGTCATGAATTCCCCGAAGACTTTATCTTTGGCACTGCCACTTCTTCCTATCAGATTGAGGGAGCTCATGA TTATACCTATGGCAAGGGTCCTAGCACCTGGGATAGATTCACTCATCAATATCCAGACAGGATCCTAGGAGGTGGTAATGGAGATATCGCATTAGATCAT TATCACAAGTACATGGAAGATATAGCGAGAATGAAATATTTAAATGTAGATGCATACAGATTCTCCATCTCGTGGCCTCGAATCATACCAACTGGCAAGA GGAGTGACGGAGTAAATCAAGAAGGAATTAAATTTTACCATACCCTCCTTGATGCACTCATTGAAAATGACATCAAAGCTTTTGTGACAATGTATCATTG GGAAACCCCACAAGGTCTTGAAGCTGAGTATGGTGGCTTCCTCAATCGTAACATTGTCAAGGACTTTGAGGATTACTGTGACCTTTTATTTCAAGAATAT GGTTCAAAAGTATATAAATGGATAACTCTAAATGAGCCTATGGGTAACTCGATGAAGTCTTACGATGAAGGAGTTTTTGCACCGGGGCATTGTTCTGTGT GGGTAGACAGAAAATGCCGACTTGGAGATTCATCAACCGAACCTTACATTGTTACTCACAATCAACTTCTTGCTCATTCCGCTGCTTACCACTTGTACAA AACCAAGTACACGGTTAGTTTCGTTTCCCAAGAAAAATATATTTGTATATAG
AA sequence Show only first row Show all	>Lus10030520 pacid=23140598 polypeptide=Lus10030520 locus=Lus10030520.g ID=Lus10030520.BGIv1.0 annot-version=v1.0 MARAIVVMMFLLVAAGSPLILADGDPCSASTYVYKPSPELPKGRHEFPEDFIFGTATSSYQIEGAHDYTYGKGPSTWDRFTHQYPDRILGGGNGDIALDH YHKYMEDIARMKYLNVDAYRFSISWPRIIPTGKRSDGVNQEGIKFYHTLLDALIENDIKAFVTMYHWETPQGLEAEYGGFLNRNIVKDFEDYCDLLFQEY GSKVYKWITLNEPMGNSMKSYDEGVFAPGHCSVWVDRKCRLGDSSTEPYIVTHNQLLAHSAAYHLYKTKYTVSFVSQEKYICI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60140		BGLU30, SRG2, D...	SENESCENCE-RELATED GENE 2, DAR...		Lus10030520 [exp]	0	1
AT2G44450		BGLU15	beta glucosidase 15 (.1)		Lus10030515 [exp]	4.6	0.8914
AT3G18290		BTS, EMB2454	embryo defective 2454, BRUTUS,...		Lus10036664 [exp]	4.9	0.8519
AT5G45950			GDSL-like Lipase/Acylhydrolase...		Lus10005279 [exp]	13.5	0.8363
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10030518 [exp]	17.9	0.8199
AT4G36850			PQ-loop repeat family protein ...		Lus10016795 [exp]	19.4	0.7851
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10012868 [exp]	23.3	0.8147
AT2G45560		CYP76C1	"cytochrome P450, family 76, s...		Lus10027428 [exp]	31.5	0.8286
AT1G12570			Glucose-methanol-choline (GMC)...		Lus10017827 [exp]	34.1	0.7740
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10012871 [exp]	37.5	0.7897
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10002777 [exp]	49.4	0.7720

Compare expression of checked genes

Lus10030520 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.