Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61670 612 / 0 Lung seven transmembrane receptor family protein (.1) AT1G72480 467 / 1e-160 Lung seven transmembrane receptor family protein (.1) AT2G01070 436 / 8e-149 Lung seven transmembrane receptor family protein (.1.2) AT1G10980 402 / 7e-135 Lung seven transmembrane receptor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012872 [exp] 1024 / 0 AT1G61670 604 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10036166 [exp] 490 / 3e-169 AT2G01070 679 / 0.0 Lung seven transmembrane receptor family protein (.1.2) Lus10013162 [exp] 486 / 1e-167 AT1G72480 715 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10008125 [exp] 481 / 5e-166 AT1G72480 719 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10005732 [exp] 477 / 3e-164 AT2G01070 678 / 0.0 Lung seven transmembrane receptor family protein (.1.2) Lus10025135 [exp] 409 / 4e-139 AT1G61670 441 / 4e-152 Lung seven transmembrane receptor family protein (.1) Lus10025218 [exp] 266 / 9e-86 AT1G61670 303 / 2e-101 Lung seven transmembrane receptor family protein (.1) Lus10025219 [exp] 262 / 8e-85 AT1G61670 308 / 6e-104 Lung seven transmembrane receptor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G109000 [exp] 625 / 0 AT1G61670 691 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.016G137700 [exp] 606 / 0 AT1G61670 683 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.003G068500 [exp] 476 / 5e-164 AT1G72480 747 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.001G166500 [exp] 472 / 2e-162 AT1G72480 738 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.001G209400 [exp] 416 / 9e-141 AT2G01070 650 / 0.0 Lung seven transmembrane receptor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0192 [flax] [poplar] GPCR_A PF06814 [flax] [poplar] Lung_7-TM_R Lung seven transmembrane receptor
Representative CDS sequence Show only first row Show all	>Lus10030521 pacid=23140636 polypeptide=Lus10030521 locus=Lus10030521.g ID=Lus10030521.BGIv1.0 annot-version=v1.0 ATGGCGAAATTTCGAGATGTCGTTTGTCATGGCTTCCCTCCGAATCCAGTCAGCCATTACTATGTAGCCCTGACATTGATGTGCCTGAGCTGCTTGGTAG ATGCCTCGATCCATGAATATGAGGATGGCGTTTTCGTTCCTCGTTCGAATTCCTACTTCTTTCATGGCGGAAGTGAAGGCCTTTATGCATCCAGAAATCA AGATGAAATCCCCGGTCAACTTGTTTCCATGGAAGACAAGGCCATCAAGGGGAAATCTTTTATCAGGTTCGAGTCAGTAATTTTCAGAAGACCAAAGGAG TCAGCCGAAAGGAAGAACGAAATGCAGCAGAAAACAGGACTAGTGGAAGCTCTAATAGTTAGGGTGAACGACCGAGATAAGATCGGCGGGTCTTATTTGA ACACCACTGCAATTTGCTGCACACCAGAACTCGCCGGAAACGGCTCCTGCAAAGTCGGAGAGGTGATCATTTGGAGCAGTTCGAACCGTCCCGAAGGGCC AAAGAGACTCCAGACGTTCTTCGAAGGAAAAAACGAAGTGGCCGAGCTTGTTCTTCAGACAGTGGAAATAAACCACGACGGAATGTACTATCTCTACTTC ATGTTCTGTGACCCGGAGCTCGTTGGGACCACAGTGAGCGGCAGAACAGTTTGGAGGAACCCGGACGGTTATCTACCGGGAAAGATGTCGCCTTTGATGT CGTTCTCCGGTTTCATGTCTCTAGCTTACTTGGGACTCGGTCTTGTCTGGTTCCTCTGGTTCACGCGTTACTGGAAAGACGTGATCCAGCTGCATTTCCA CATTACGGCTGTGATCGCTTTGGGAATGTGCGAGATGGCTCTCTGGTACTTTGAGTACGCTAATTTCAACTCGAACGGGAGTAGACCGCTGGCCATAACG TTCTGGGCAGTTACATTCAGTGCTGTCAAGAAAACCGTTTCTCGTCTTCTCCTCTTGGTAGTTTCGATGGGGTATGGCGTTGTGCGGCCGACTCTTGGTG CTTTGACGTTCAAGGTGCTGCTCCTCGGTGTCGCCTATTTCGTAGCGTCCGAAGCGCTTGGGTTGTTCGAGAATCTGGGGAACATCAACGACTTCTACGG GAAAGCCAGGCTTATCCTTGTGTTGCCAGTTGCTGTACTGGATGCCTGCTTCATCGTTTGGATCTTCTCGGCACTGTCCCAAACCTTGGAGAAGCTTCAG GTGAGAAGAAGTGGAGCCAAGTTTGCACTGTACCAAAAGTTCACCAATTTCCTTGCTGCATCAGTGCTATTGTCGATTGGCTGGATAGGTTATGAGTTGT ACTTCAACGCAACCGATCCACTGGGAGAGCTGTGGAGAGTAGCATGGATCATCCCGGCCTTCTGGACTCTGCTTGCTTATCTACTTCTCATCGTTGTATG CGTTCTTTGGGCTCCTTCCCCGAACCCAACAAGGTATTCGTACTCGGAGGAGACAGGGGATGATATTGAAGAACAGGAGACGATGATTCCATTCTCTGGA GTCAGCGGCGGAGATGTACCGACGGCGACGTTGGAGATTAGGAAGGAGAGGAAGCTACTGTCAAGTGCTGCACCACCAGCTGCATCAGAATACTACGTGT TTCGACTTGGAGAAGATCTGGAGGAAAACAAGAGGGAATAA
AA sequence Show only first row Show all	>Lus10030521 pacid=23140636 polypeptide=Lus10030521 locus=Lus10030521.g ID=Lus10030521.BGIv1.0 annot-version=v1.0 MAKFRDVVCHGFPPNPVSHYYVALTLMCLSCLVDASIHEYEDGVFVPRSNSYFFHGGSEGLYASRNQDEIPGQLVSMEDKAIKGKSFIRFESVIFRRPKE SAERKNEMQQKTGLVEALIVRVNDRDKIGGSYLNTTAICCTPELAGNGSCKVGEVIIWSSSNRPEGPKRLQTFFEGKNEVAELVLQTVEINHDGMYYLYF MFCDPELVGTTVSGRTVWRNPDGYLPGKMSPLMSFSGFMSLAYLGLGLVWFLWFTRYWKDVIQLHFHITAVIALGMCEMALWYFEYANFNSNGSRPLAIT FWAVTFSAVKKTVSRLLLLVVSMGYGVVRPTLGALTFKVLLLGVAYFVASEALGLFENLGNINDFYGKARLILVLPVAVLDACFIVWIFSALSQTLEKLQ VRRSGAKFALYQKFTNFLAASVLLSIGWIGYELYFNATDPLGELWRVAWIIPAFWTLLAYLLLIVVCVLWAPSPNPTRYSYSEETGDDIEEQETMIPFSG VSGGDVPTATLEIRKERKLLSSAAPPAASEYYVFRLGEDLEENKRE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61670			Lung seven transmembrane recep...		Lus10030521 [exp]	0	1
AT4G10650			P-loop containing nucleoside t...		Lus10006578 [exp]	10.0	0.6840
AT3G19440			Pseudouridine synthase family ...		Lus10002811 [exp]	11.1	0.7171
AT1G25360			Pentatricopeptide repeat (PPR)...		Lus10040577 [exp]	14.6	0.7110
AT4G13070			RNA-binding CRS1 / YhbY (CRM) ...		Lus10040896 [exp]	17.0	0.6428
AT2G33760			Pentatricopeptide repeat (PPR)...		Lus10025490 [exp]	18.5	0.6539
AT2G32400		ATGLR3.7, GLR5	GLUTAMATE RECEPTOR 3.7, glutam...		Lus10027170 [exp]	29.4	0.7068
AT2G19490			recA DNA recombination family ...		Lus10017151 [exp]	32.6	0.6981
AT1G56570		PGN	PENTATRICOPEPTIDE REPEAT PROTE...		Lus10019891 [exp]	41.0	0.6518
AT4G15570		MAA3	MAGATAMA 3, P-loop containing ...		Lus10038906 [exp]	41.3	0.6587
AT1G61670			Lung seven transmembrane recep...		Lus10012872 [exp]	62.5	0.6383

Compare expression of checked genes

Lus10030521 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.