Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40720 511 / 3e-173 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 248 / 1e-72 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G02750 230 / 7e-68 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G55740 231 / 1e-66 CRR21 chlororespiratory reduction 21, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G04370 229 / 2e-66 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G69350 223 / 1e-63 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 221 / 5e-63 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G39530 218 / 1e-61 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 214 / 4e-61 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G03380 210 / 9e-60 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012873 [exp] 982 / 0 AT2G40720 946 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015225 [exp] 236 / 4e-68 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008967 [exp] 230 / 4e-66 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028855 [exp] 226 / 1e-63 AT4G21300 873 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 221 / 1e-62 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 217 / 6e-61 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038400 [exp] 216 / 6e-61 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 216 / 2e-60 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 215 / 3e-60 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G090600 [exp] 605 / 0 AT2G40720 912 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G067500 [exp] 245 / 8e-71 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G156800 [exp] 237 / 8e-69 AT4G21300 842 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 237 / 1e-68 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 216 / 1e-60 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G052200 [exp] 215 / 1e-60 AT2G39620 816 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G067000 [exp] 213 / 3e-60 AT1G18485 500 / 8e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.019G075400 [exp] 210 / 8e-60 AT1G71460 886 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G187800 [exp] 214 / 1e-59 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G215500 [exp] 211 / 5e-59 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10030522 pacid=23140587 polypeptide=Lus10030522 locus=Lus10030522.g ID=Lus10030522.BGIv1.0 annot-version=v1.0 ATGGTCATGAGGTTGAGCCTGAATCGGCAAACTGTTCGTCGATTTTCTTCTGCAACGTTAAGCTCGCAATTCTACGGTCCCAAAATCAAGGACTTAATTC AACAAGGACGGAATGTTCAAGCACTCCAGCTGTATGCTCGGCACACTCCTCTTGCCATTTCCGAGTTCACCTTCCCTTCACTTCTCAAAGCTTGTGCGTT TCTCCAAAACCTTCGATATGGAAGAACGATTCACGCAACGATCATCGCCATGGGTCTGTTCATCGACCCATTTATTACCAGCTCTCTCATCAACATGTAT GTGAAATGCGGGTCACTACAGGACGCAATCCAGGTGTTCGACGAATTGCCCGAGAGTGAACTTGCAGTTGGGGATTCGTCGATTTGGAACTCTATCATAG ATGGGTATCTCCGGTTTGGGCATATTGACGAGGGTGTAGCTCACTTTCGTCGGATGCAGAGTTCTGGATTTCCTGCCGATGGCTACTCATTGTGCATTCT GCTTGGGAATTTGGGGTATGAACAAGGGAGGCAAACTCATGGTTATATCGTTCGAAACGTAGTTTGTGGTGACCCTTTGTTGGAAAGTTCGCTCCTTGAT ATGTACTTTAGGTGCGGTAGGCCGATGACTTCCTGGCGTGTTTTCGAAAAGATTGAAAATAGGAGGATGAATGTTGTGGCGTGGAATGTGATGATGGGAG GACTTGCTGAGAATGGTTTGTGGGAAGGAAGCTTGGAGTTGTACGTGATGGCCAAGAGTGAGGAAGTTGAACTTGTTTCGGCATCTTTCACCAATACTTT GGGTGCTAGTGGTAAGGGCAACTGTGTAAGTTTTGGTGAGCAGGATCATTCTGATGTCGTTAAGATGGGTTTCAAGGATGATCAATATGTTTGTACTTCT CTAATGACGATGTATGCCAAGTGCAAATTGGTGGAAGATGCAGAACGAGTGTTTGAGAAAGTAATAGATAAGGGACTTGAACTGTGGAATGCAATGATCT CAGGCTATGCTGCTAATGGATTTGTTTATGGGGCTTTGGGTACTTACAGGGAAATGAAGCTTTCTCCTGTTCTACCTGATATTTTCTCGATGTCACATGT TCTATCTTGTTGTAGTACAGATGGATTGGTCGGCTTAGGCAGCAGCATGAAAGACAGAGATGTGGTAGCATGGGGATCGATGATCTCGGGGTTTTGCCAA AATGGAAAATACATGGAGGCTTTGGCTCGTTTCGGTGAAATGGACGAACATGGTGTGAAACCTGATTCTGACATTATGGCAAGCGTCGTAAGCTCTTGTG CGGGGATAGAGAACGTAAAACTGGGATGTACGATGCATGGATTGGTTATTAAGAGTGGACTGGAGCATGATGTTTTTGTTGCAAGTTCCCTTTTGGATAT GTACTCCAAGTGTCGGCTCCCTGAGATGGCTGACAATGTCTTTTCTCACATGCGCTTCAAGAACACTGTTGCTTGGAATTCTATGGTATCTTGTTATAGC CGGAATGGCCAACCTGAGAGGTCGATTGATACGTTTTCTCAATTTCTACAGTGGGGGATGGAACCGATTTACTCTCTGTCACTAATGTCCTTGTTGCTGT TTCATCAATGGCAGCTCTTCTCAGAGGAAAAGCTCTGCATGGGTACCTCATAA
AA sequence Show only first row Show all	>Lus10030522 pacid=23140587 polypeptide=Lus10030522 locus=Lus10030522.g ID=Lus10030522.BGIv1.0 annot-version=v1.0 MVMRLSLNRQTVRRFSSATLSSQFYGPKIKDLIQQGRNVQALQLYARHTPLAISEFTFPSLLKACAFLQNLRYGRTIHATIIAMGLFIDPFITSSLINMY VKCGSLQDAIQVFDELPESELAVGDSSIWNSIIDGYLRFGHIDEGVAHFRRMQSSGFPADGYSLCILLGNLGYEQGRQTHGYIVRNVVCGDPLLESSLLD MYFRCGRPMTSWRVFEKIENRRMNVVAWNVMMGGLAENGLWEGSLELYVMAKSEEVELVSASFTNTLGASGKGNCVSFGEQDHSDVVKMGFKDDQYVCTS LMTMYAKCKLVEDAERVFEKVIDKGLELWNAMISGYAANGFVYGALGTYREMKLSPVLPDIFSMSHVLSCCSTDGLVGLGSSMKDRDVVAWGSMISGFCQ NGKYMEALARFGEMDEHGVKPDSDIMASVVSSCAGIENVKLGCTMHGLVIKSGLEHDVFVASSLLDMYSKCRLPEMADNVFSHMRFKNTVAWNSMVSCYS RNGQPERSIDTFSQFLQWGMEPIYSLSLMSLLLFHQWQLFSEEKLCMGTS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40720			Tetratricopeptide repeat (TPR)...		Lus10030522 [exp]	0	1
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10023710 [exp]	1.0	0.9122
AT1G56690			Pentatricopeptide repeat (PPR)...		Lus10013149 [exp]	2.8	0.8950
AT3G16840			P-loop containing nucleoside t...		Lus10023706 [exp]	5.5	0.8853
AT1G26370		RID1	RNA helicase family protein (....		Lus10036917 [exp]	8.0	0.8722
AT4G17610			tRNA/rRNA methyltransferase (S...		Lus10011019 [exp]	12.0	0.8949
AT3G06530			ARM repeat superfamily protein...		Lus10008676 [exp]	15.2	0.9000
AT3G29230			Tetratricopeptide repeat (TPR)...		Lus10030932 [exp]	16.4	0.8743
					Lus10019215 [exp]	17.3	0.8522
AT5G40520			unknown protein		Lus10027029 [exp]	17.3	0.8824
AT1G63130			Tetratricopeptide repeat (TPR)...		Lus10029737 [exp]	17.5	0.8816

Compare expression of checked genes

Lus10030522 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.