Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40700 799 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G65900 291 / 6e-90 DEA(D/H)-box RNA helicase family protein (.1) AT3G18600 281 / 6e-87 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G71370 214 / 7e-62 DEA(D/H)-box RNA helicase family protein (.1) AT5G05450 214 / 1e-61 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G54910 207 / 6e-58 DEA(D/H)-box RNA helicase family protein (.1) AT5G60990 190 / 1e-53 DEA(D/H)-box RNA helicase family protein (.1) AT4G16630 192 / 2e-52 DEA(D/H)-box RNA helicase family protein (.1) AT5G63120 187 / 1e-51 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G20920 187 / 2e-50 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012874 [exp] 1226 / 0 AT2G40700 793 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10009616 [exp] 285 / 2e-87 AT3G18600 721 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10027240 [exp] 283 / 3e-87 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038950 [exp] 280 / 4e-86 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10008989 [exp] 221 / 3e-65 AT3G18600 508 / 2e-177 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10012172 [exp] 223 / 1e-62 AT5G54910 865 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10009838 [exp] 218 / 1e-62 AT5G05450 721 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10007574 [exp] 220 / 6e-62 AT5G54910 862 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10031761 [exp] 194 / 3e-55 AT5G60990 679 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G059100 [exp] 897 / 0 AT2G40700 814 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G250700 [exp] 288 / 4e-89 AT3G18600 740 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G045300 [exp] 283 / 3e-87 AT3G18600 747 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G073100 [exp] 231 / 1e-67 AT5G05450 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G423300 [exp] 223 / 2e-63 AT5G54910 858 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.007G068800 [exp] 190 / 1e-53 AT5G60990 656 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.005G241300 [exp] 193 / 6e-53 AT4G16630 829 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.002G003600 [exp] 188 / 2e-50 AT1G20920 1201 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.003G038300 [exp] 182 / 2e-50 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.014G097700 [exp] 183 / 2e-49 AT5G63630 768 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10030523 pacid=23140551 polypeptide=Lus10030523 locus=Lus10030523.g ID=Lus10030523.BGIv1.0 annot-version=v1.0 ATGGGAAAAGCTGCGGCGCAAGTTATGGATAGTAAGACGAAGAAGAGAAGAAGAGACGAAGACAAGTCGGAGAACAAAGAGGTTGAAGCTATAGTGACGA AGGGAAGCTCCGACGTGTTCGCAGATTGTTCTTTCTCGGCTCTCGGCCTCCATTCCACCCTCTGTGACCAGCTCCGAGAGAGGATGGGGTTTGAAGCTCC GACTTTGATTCAGGCTCAAGCTATTCCTGTTATTCTCTCCGGCCGCCATGTACTTGTGAATGCTGCTACTGGGACTGGGAAAACCGTTGCATATTTAGCT CCAATTATTCATCACTTGCAGAGCTACACTCCTAAGATTGACCGCTCCCAGGGAACTTTTGCTTTGGTTCTTGTGCCGACGAGGGAGCTGTGCATGCAAG TTTACGAGATTCTGCAGAAGTTATTGCACCGTTTTCACTGGATTGTCCCTGGTTATGTGATGGGTGGTGAAAGCAGAAACAAAGAGAAAGCCCGGCTCCG TAAAGGTATTTCCATTCTAGTCGCAACTCCTGGCCGTCTATTAGATCACATGAAGCATACATCGTCTTTCACGCATTCAAATCTACGCTGGGTAATCTTT GATGAAGCAGATAGAATTTTGGAACTAGGGTTTGGCAAAGGGATAGAGGAGATATTGGAAGTCTTAGGTTCCAAGAAAACTGGCTCGACGGACAAGGGAA ATGAGCACCCAAGTGTCTCTACTGCCCAGAGGCAAAATTTGTTGTTGTCTGCTACATTAAATGAAAAAGTGAATAATCTTGCAAAAATAAGCTTGGAAAG TCCAGTTCTGATTGGCCTTGATGACAAGAAAGCTCATATGGATCCATCACTTCCACGTCATAAAAACATAGAATTCGATGCTGATGATAATCTACTGAAA AGCGCAACAACCGAAGACTACAGGCTACCTTCTCAAGTAGTGCAGAAATATGTGAAAGTGCCATGTGGTGCAAGGCTTTCAGTGCTGCTATCCGTTCTAA AACATCTATTTGAAAAACAAACATCCCAAAAGATTGTGGTGTTCTTTTCGACATGCGCTGCAGTAGATTTTCACTACGCTTTGTTGAATGGATTCCGCTG GTCAAGCACTTCAAAATCCAATTCAGAACTCAAGGAAACGCTCTTGAAATGCAAGACTTTCCGGCTGCATGGAAATATGGAACAAGAGGATCGGAAAACC ACCTTCCAGTCTTTCAAAACCGAGAAATCAGCTCTTCTTTTATCATCAGATGTCGCAGCCAGAGGCTTGGATTTCCCTAAAGTTAGATGCATTATACAGT ATGATTCCCCAGGAGACGCTACTGAATATGTTCACAGAGTTGGCAGAACTGCCAGGTTAGGCGAGAAGGGAGATTCTATACTATTTATGCAGCCAGTCGA AGTAGATTATTTGCAAGAGCTGCAAAAGCACGGAGTATCCCTCACAGAGTATCCGGTGCTCAAGATTCTGGATAGTTTCCCTTTGTATGGTCCTTCTCAC GGAGGAAAGAGATCAGTTTTCTTAGACTTGCACCCTTTTCTGGTATCTCTGCAGAGGGCACTTGAATCATTTGTTGGATCCGAGCCGAAGGTGAACAAAC TGGCGCAGGAAGCGTTCTGCTCCTGGGTGCGAGCTTACACGGCGCACCGGGGAGAGCTGAAGCGGATATTCGTGGTAAAGAAACTTCACCTGGGGCATGT TGCGAAAAGCTTTGCCCTGAAGCAACAGCCTTCGCTGGTTGGTGGGTCTCATTCGAAGCAGATGAAGAAGGATCATAAGCAGAAAGGTTTGGCAAAGAGA AGGAAGGTTACTACTGGTAAAGCAACATGGATCTCCTCAGAGTCTTGA
AA sequence Show only first row Show all	>Lus10030523 pacid=23140551 polypeptide=Lus10030523 locus=Lus10030523.g ID=Lus10030523.BGIv1.0 annot-version=v1.0 MGKAAAQVMDSKTKKRRRDEDKSENKEVEAIVTKGSSDVFADCSFSALGLHSTLCDQLRERMGFEAPTLIQAQAIPVILSGRHVLVNAATGTGKTVAYLA PIIHHLQSYTPKIDRSQGTFALVLVPTRELCMQVYEILQKLLHRFHWIVPGYVMGGESRNKEKARLRKGISILVATPGRLLDHMKHTSSFTHSNLRWVIF DEADRILELGFGKGIEEILEVLGSKKTGSTDKGNEHPSVSTAQRQNLLLSATLNEKVNNLAKISLESPVLIGLDDKKAHMDPSLPRHKNIEFDADDNLLK SATTEDYRLPSQVVQKYVKVPCGARLSVLLSVLKHLFEKQTSQKIVVFFSTCAAVDFHYALLNGFRWSSTSKSNSELKETLLKCKTFRLHGNMEQEDRKT TFQSFKTEKSALLLSSDVAARGLDFPKVRCIIQYDSPGDATEYVHRVGRTARLGEKGDSILFMQPVEVDYLQELQKHGVSLTEYPVLKILDSFPLYGPSH GGKRSVFLDLHPFLVSLQRALESFVGSEPKVNKLAQEAFCSWVRAYTAHRGELKRIFVVKKLHLGHVAKSFALKQQPSLVGGSHSKQMKKDHKQKGLAKR RKVTTGKATWISSES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40700			P-loop containing nucleoside t...		Lus10030523 [exp]	0	1
AT3G20280			RING/FYVE/PHD zinc finger supe...		Lus10005192 [exp]	1.4	0.8914
AT3G57000			nucleolar essential protein-re...		Lus10035220 [exp]	2.0	0.8867
AT1G04210			Leucine-rich repeat protein ki...		Lus10041180 [exp]	2.8	0.9221
AT2G47300			ribonuclease Ps (.2.3)		Lus10001156 [exp]	4.9	0.8776
AT2G40700			P-loop containing nucleoside t...		Lus10012874 [exp]	6.0	0.8596
AT4G19210		ABCE2, ATRLI2	ARABIDOPSIS THALIANA RNASE L I...		Lus10034771 [exp]	6.3	0.8586
AT3G11710		ATKRS-1	lysyl-tRNA synthetase 1 (.1)		Lus10001625 [exp]	7.9	0.8572
AT1G33390		ATFAS4	FASCIATED STEM 4, RNA helicase...		Lus10025616 [exp]	8.1	0.8881
AT3G18640	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10033487 [exp]	8.7	0.8496
AT4G38440		IYO	MINIYO, unknown protein		Lus10025099 [exp]	9.0	0.8740

Compare expression of checked genes

Lus10030523 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.