Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14620 322 / 1e-112 XTR2, EXGT-A2, DECOY decoy (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012875 [exp] 441 / 2e-159 AT1G14620 335 / 1e-117 decoy (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G164800 [exp] 333 / 3e-117 AT1G14620 300 / 5e-104 decoy (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [flax] [poplar] NUDIX PF11788 [flax] [poplar] MRP-L46 39S mitochondrial ribosomal protein L46
Representative CDS sequence Show only first row Show all	>Lus10030524 pacid=23140751 polypeptide=Lus10030524 locus=Lus10030524.g ID=Lus10030524.BGIv1.0 annot-version=v1.0 ATGCGGCGGTCGTTGTCGTTGCTGCCTCGGCGTCTGCTGACGACGAGGGAATTCTCTACCAGCAGCTCGGAGAAAATCGTAGCTTCAGTCCTCTTCGAGA GGCTTCCCGTCGTCATCCCCAAAATCGACCCTGTCGTTTACGCTTTCCAGGAGTTCTCGTTTCGGTGGCGGCAGCAGTATAGCAGAAGATACCCGGATGA GTTCTTGAACAAATCCAACTCCAGGGCACAAGGCGATTACCAAATAGACTATGTCCCAGCTCCAAGAATCACAAAAGCTGACGAAACAAATGACAGAAAG TCCCTTCAGAGGGCACTTGATAGAAGGCTGTACCTTCTTCTCCACGGAAAGGCTCATGGATCTCCCGATGACAAGCCTATCTGGCATTTCCCACAGAAGA TTTACGATTCTGAAGAGACATTGCGCAAGTGTGCCGAGTCCGCATTGCAGTCTGTTCTAGGGGATCTCTCCCACACATATTTTGTCGGAAACGCTCCTAT GGGGCATTTGGTCGTGCAGCCTGAAGAAAAGCCACAGGAACTCGGTTACAAGCAATTCTTTTTCAAGTCCCAGGTGATTGCGACGAACGAGTTCAAAATC AGGAAGTGTGGGGATTTCGTGTGGGTGACCAAGGATGAACTGCTGGAGTTTTTCCCAGAGCATGCTGAGTTCTTCAAAAAGATGATCATCAGTTGA
AA sequence Show only first row Show all	>Lus10030524 pacid=23140751 polypeptide=Lus10030524 locus=Lus10030524.g ID=Lus10030524.BGIv1.0 annot-version=v1.0 MRRSLSLLPRRLLTTREFSTSSSEKIVASVLFERLPVVIPKIDPVVYAFQEFSFRWRQQYSRRYPDEFLNKSNSRAQGDYQIDYVPAPRITKADETNDRK SLQRALDRRLYLLLHGKAHGSPDDKPIWHFPQKIYDSEETLRKCAESALQSVLGDLSHTYFVGNAPMGHLVVQPEEKPQELGYKQFFFKSQVIATNEFKI RKCGDFVWVTKDELLEFFPEHAEFFKKMIIS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14620		XTR2, EXGT-A2, ...	decoy (.1.2)		Lus10030524 [exp]	0	1
AT3G10530			Transducin/WD40 repeat-like su...		Lus10035742 [exp]	4.5	0.8718
AT3G10530			Transducin/WD40 repeat-like su...		Lus10037324 [exp]	5.0	0.8482
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Lus10031974 [exp]	5.7	0.8563
AT5G44200		ATCBP20, CBP20	CAP-binding protein 20 (.1.2)		Lus10033636 [exp]	7.1	0.8618
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Lus10042047 [exp]	8.0	0.8369
AT4G29390			Ribosomal protein S30 family p...		Lus10002508 [exp]	9.2	0.8216
AT5G06210			RNA binding (RRM/RBD/RNP motif...		Lus10013306 [exp]	12.7	0.8349
AT1G12580		PEPKR1	phosphoenolpyruvate carboxylas...		Lus10015009 [exp]	14.3	0.8294
AT3G09500			Ribosomal L29 family protein ...		Lus10003306 [exp]	16.1	0.8485
AT5G45920			SGNH hydrolase-type esterase s...		Lus10000525 [exp]	19.2	0.8333

Compare expression of checked genes

Lus10030524 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.