Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78770 810 / 0 APC6 anaphase promoting complex 6 (.1) AT3G48150 49 / 1e-05 CDC23, APC8 anaphase-promoting complex subunit 8 (.1) AT3G04240 48 / 2e-05 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G16320 45 / 9e-05 CDC27a Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012876 [exp] 1023 / 0 AT1G78770 806 / 0.0 anaphase promoting complex 6 (.1) Lus10003113 [exp] 51 / 2e-06 AT3G04240 1687 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004779 [exp] 50 / 4e-06 AT3G04240 1683 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004242 [exp] 44 / 0.0005 AT3G48150 895 / 0.0 anaphase-promoting complex subunit 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G389300 [exp] 877 / 0 AT1G78770 911 / 0.0 anaphase promoting complex 6 (.1) Potri.011G108800 [exp] 874 / 0 AT1G78770 907 / 0.0 anaphase promoting complex 6 (.1) Potri.001G389500 [exp] 242 / 2e-77 AT1G78770 244 / 1e-78 anaphase promoting complex 6 (.1) Potri.018G086300 [exp] 49 / 6e-06 AT2G20000 1146 / 0.0 HOBBIT, CDC27 family protein (.1) Potri.006G164000 [exp] 48 / 1e-05 AT2G20000 1098 / 0.0 HOBBIT, CDC27 family protein (.1) Potri.012G075000 [exp] 44 / 0.0003 AT3G48150 957 / 0.0 anaphase-promoting complex subunit 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat CL0020 [flax] [poplar] TPR PF07720 [flax] [poplar] TPR_3 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10030525 pacid=23140702 polypeptide=Lus10030525 locus=Lus10030525.g ID=Lus10030525.BGIv1.0 annot-version=v1.0 ATGAGAGAAGAGAAACTCGAGAAGCTGCGAGGCGTGGTGCGGGACTGCCTCAGCAAGCATTTGTACTCTTCCGCCATCTTCTTCGCCGACAAGGTCGCCG CCTTCACCAACGACCCTGCTGACATCTACATGCAAGCCCAGGCACTATTCCTCGGACGCCACTACCGCCGTGCTTTCCACCTACTCAACGCCTCCAGGAT CGTGCTTCGTGACCTCCGATTCCGTTACCTCGCTGCCAAATGCCTCGAGGAGTTGAAGGAGTGGGATCAATGTCTGTTGATGCTGGGTGGTGCTAAGGTT GATGAAGATGGGAATGTTTATGATATGGCGGGTCCGAATGCTATGTACTTGGATAAAGATGGGGAAGACCGTGAGATTAATATATCATCAGCGATATGTT TTCTAAGAGGAAAGGCATATGATGCCTTGGAAAATCATGCACAGGCTCGGCTGTGGTACAAAGCTGCTGTTAAAGCTGACCCCCTATGCTATGAGGCTTT GGAATGTCTTTGTCAAAATCACATGCTGACTTGTGAAGAAGAGACAAGTCTGCTTTCATCCCTGCAATTTGGTGATGAAGATGGCTGGCTTTCATCGTTT TATTCATGCTTGGGGAAAAAGTGCAACAAAGAAAGTGTTGTAGAAGCCAACTTCCGAGAGCTTGAGAAAGAGAGTTGCAACAATAATCCTTCCAGTCCAT ATTTTATGCGCACGCTGAAGAATGATACTGATCTCTTGGCCTGCAAAGCTGAGTACTACCATCAATTGGGTGAATACCAGAAATGCTTCGACATAACGTC TTCATTGCTTGAGAAGGACCCTTTCCACTATAGAAGCACTTTGGTTCATTTGGCTGCTGCCATGGAGCTTGGAAATTCAAATGAGCTTTATGTCATGTCA TGCAATTTGGTCAAGGATGATCCTCAAAGGTTGGACTTTACAAGTTCTGATAGAGAATGGTTTCATGTCAGGGCTCTTTCTTGGTTTGCTGTTGGTTGCT ACTACTCTTCTATCAAGAAATATGACCAGGCACGTCAATATTTCGGCAAATCAACTAGTCTCGACGGGACCTTTGCACCTGCTTGGATAGGTTATGGGAA TGCTTATGCTGCTAAAAAGGAGGGTGATCATGCAATGTCCGCCTACCGTACAGCAGCCCGTTTATTTCCAGGGTGCCACCTGCCAACATTATATATTGGG ATGGAGTACATGCGGAGTCATAGCTTCAAACTTGCTGAGCAGTTCTTATTGCAGGCAAAGGAAATCTGCTCTTTTGATCCATTAGTATATAATGAACTTG GAGTTGTCGCTTATAGTATGAAGGAGTATAATAAAGCTGTGTTCTGGTTCGAGAAGACTTTAGCTCATATTCCTTCATTAAGTCAACAGTGGGAGCCTAC TGTCGTGAATCTCGCCCATGCGTACCGAAAGCTAAAGAGATACGATGACGCAATCTCCTACTACGAGAGAGCTCTTGCACTATCTACCACAAGTTTGAGT ACTTATTCCGGACTCGCATACACTTACCATCTGCAGGACAATTTCACAGCTGCAATAACATACTACCACAAGGCACTATGGCTGAAACCAGAGGATAAGT TCTGCGGAGAAATGCTGAGCCTGGCGCTTGTCGACGAAGCTCGTAATGGTACAGATCCTGAGTTCGAGTCTCGGATGAGTGAGGTTTTCGAGCATTGA
AA sequence Show only first row Show all	>Lus10030525 pacid=23140702 polypeptide=Lus10030525 locus=Lus10030525.g ID=Lus10030525.BGIv1.0 annot-version=v1.0 MREEKLEKLRGVVRDCLSKHLYSSAIFFADKVAAFTNDPADIYMQAQALFLGRHYRRAFHLLNASRIVLRDLRFRYLAAKCLEELKEWDQCLLMLGGAKV DEDGNVYDMAGPNAMYLDKDGEDREINISSAICFLRGKAYDALENHAQARLWYKAAVKADPLCYEALECLCQNHMLTCEEETSLLSSLQFGDEDGWLSSF YSCLGKKCNKESVVEANFRELEKESCNNNPSSPYFMRTLKNDTDLLACKAEYYHQLGEYQKCFDITSSLLEKDPFHYRSTLVHLAAAMELGNSNELYVMS CNLVKDDPQRLDFTSSDREWFHVRALSWFAVGCYYSSIKKYDQARQYFGKSTSLDGTFAPAWIGYGNAYAAKKEGDHAMSAYRTAARLFPGCHLPTLYIG MEYMRSHSFKLAEQFLLQAKEICSFDPLVYNELGVVAYSMKEYNKAVFWFEKTLAHIPSLSQQWEPTVVNLAHAYRKLKRYDDAISYYERALALSTTSLS TYSGLAYTYHLQDNFTAAITYYHKALWLKPEDKFCGEMLSLALVDEARNGTDPEFESRMSEVFEH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78770		APC6	anaphase promoting complex 6 (...		Lus10030525 [exp]	0	1
AT1G07970			unknown protein		Lus10023345 [exp]	2.6	0.9274
AT1G78770		APC6	anaphase promoting complex 6 (...		Lus10012876 [exp]	4.2	0.8917
AT3G20070		TTN9	titan9 (.1.2)		Lus10026248 [exp]	6.3	0.9021
AT2G42120		POLD2	DNA polymerase delta small sub...		Lus10016262 [exp]	6.7	0.9103
AT5G42970		FUS4, EMB134, C...	FUSCA 8, FUSCA 4, EMBRYO DEFEC...		Lus10007164 [exp]	8.4	0.8471
AT3G10180			P-loop containing nucleoside t...		Lus10012103 [exp]	10.1	0.9219
AT1G09760		U2A'	U2 small nuclear ribonucleopro...		Lus10000970 [exp]	10.1	0.8655
AT2G36200			P-loop containing nucleoside t...		Lus10017016 [exp]	15.2	0.9041
AT2G23380		SET1, SDG1, ICU...	SETDOMAIN 1, SETDOMAIN GROUP 1...		Lus10009369 [exp]	15.9	0.8786
AT3G12280		RB1, RBL1, RBR1...	RETINOBLASTOMA 1, RETINOBLASTO...		Lus10026154 [exp]	17.4	0.8627

Compare expression of checked genes

Lus10030525 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.