Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56370 1077 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G01890 905 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT3G28040 658 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT1G12460 439 / 2e-139 Leucine-rich repeat protein kinase family protein (.1) AT1G62950 433 / 2e-137 leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G51740 323 / 2e-96 IMK2 inflorescence meristem receptor-like kinase 2 (.1) AT5G62710 256 / 3e-74 Leucine-rich repeat protein kinase family protein (.1) AT1G17230 264 / 1e-73 Leucine-rich receptor-like protein kinase family protein (.1) AT3G24240 258 / 2e-71 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT3G49670 250 / 2e-69 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012877 [exp] 1652 / 0 AT3G56370 1162 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10022738 [exp] 942 / 0 AT5G01890 1035 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10014174 [exp] 934 / 0 AT5G01890 1032 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10025139 [exp] 903 / 0 AT3G56370 1021 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025223 [exp] 901 / 0 AT3G56370 1026 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035687 [exp] 556 / 0 AT3G28040 1021 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10006675 [exp] 423 / 2e-133 AT1G12460 984 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10036251 [exp] 353 / 2e-104 AT4G20140 1495 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10035783 [exp] 332 / 2e-100 AT5G65700 857 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G091000 [exp] 1201 / 0 AT3G56370 1227 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G058600 [exp] 1188 / 0 AT3G56370 1174 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G137000 [exp] 1011 / 0 AT3G56370 1116 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G108600 [exp] 988 / 0 AT5G01890 1115 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.014G147300 [exp] 682 / 0 AT3G28040 1156 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G233600 [exp] 644 / 0 AT3G28040 1116 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G117500 [exp] 473 / 2e-152 AT1G12460 1074 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G114500 [exp] 473 / 6e-152 AT1G12460 1074 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.002G019900 [exp] 367 / 2e-111 AT1G75820 1226 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.008G140500 [exp] 360 / 1e-107 AT2G01950 1535 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10030526 pacid=23140621 polypeptide=Lus10030526 locus=Lus10030526.g ID=Lus10030526.BGIv1.0 annot-version=v1.0 ATGCTGAAGATGGGAAGAAAGGGAAGGACGCCACTACTTATCGTCCTGCTCATCGCCATTTTCACGTGCTCCTCTGTTCTGGGATATCTGTCTCCATCCC TAAACGACGACGCTTTGGGCCTGATAGTGTTCAAATCCGACCTCCAAGACCCAGGCGGAAAGCTCGCGTCTTGGAACCAAGACGATGACACTCCTTGCAA CAACTGGTTCGGAGTGAAATGCAACCCCAGATCCAACCGGGTCACGGAGCTCAACCTAACTGGGCTCTCCCTCTCGGGTCGAATCGGCCGTGGACTCCTC CAGCTCCAATTCCTCCGCAAGCTAACCCTCTCAAGTAACAACCTCACCGGTTCTTTCCCCGGAGAGCTCTCCAACCTCCAGAACCTCACAGCCGTCGATT TAACCAACAATTCTTTCTCCGGCGAACTCCCCAGCGACTTCTTCGCCCAATGTGGGTCCCTCCGAGCCATTTCCCTAGCTGGAAACAGATTCTCCGGGAA GATTCCTGATTCTTTAAGCTCATGTACTAGTCTTGTCTATGTTAATTTCAGCTCCAGTCAGTTCTCCGGCTCTCTGCCAGCTGGCATTTGGGGTCTGACC GGATTAAGGTCAGTTGATTTCTCTGGTAATTCTCTGGAAGGTGGGATTCCTTCAGGGATTGAACGTTTGAACAACTTGCGTGCTGTGAACTTGAGCAAGA ACAAGTTTACTGGTACCATTCCTGATGGTATCGGAAGGCTTTTCTTGCTTAGAACTGTTGATTTCAGCTGGAATTCCTTCTCTGGATATCTTCCTAGAAC AATGAGAAGCCTTGGAATGTGTTGCTATATGAGCATTGGTCATAATTCGTTGACAGGTGAAGTTCCTAGCTGGATTGGGGAAATGAAACGCCTGGAAAGT TTGGATCTTTCCATGAATAACTTCTCCGGTCGGATTCCTGCTTCGATTGGGAAGCTTGGAATGCTTAAAGTATTGAACTTTTCTGGTAATGCTCTATCCG GTTGGCTCCCGGATTCGTTGTCAAGCTGCGGTAGTCTTACTGCTTTGGATTTGAGCCGAAATGAGTTGAGTGGTTGGCTCCCGGATTTCAACTCGAGTTC GAAGTTCGAGTATTTGGATTTGTCGGATAATCAGCTGTCTGGCGAGATTGGTTCCGGCATTGGCTACCAAAGTAAGCTGATGGTGTTGGATTTGTCGAAG AATTCGCTTGCTGGTCCTGTTCCGGGAGCCATTGGGAAGCTGAAGGAACTTGGTGTTCTGGACTTGAGTGATAACAAGTTTAATGGGAGCATACCTTTGG AGATTGGGGCAGCTGCTTCGCTTAAGGAACTTAGGCTGGATTCCAACTTCCTGTCCGGTCAGATTCCGAATTCGATCGGAGACTGCTCAAAGTTAACCAC ATTAGTTGCTTCTGGGAACATCTTGAGTGGACCTATACCTGCATCCATGGCCAAACTCACAAACTTACAATACGTAGACTTATCCATCAACACCCTCTCC GGAACCTTACCAAAGCAGTTAGCCAATCTTCCAAACATCATCACTTTCAACATCTCACACAATCATCTGCAAGGTGAACTTCCCTCTGGTGGTTTCTTCA ACATCATTTCGCCTTCTTCAGTCTCTGGAAACCCTTCCCTGTGTGGAAGTGTTGTCAACAAAACATGCCAGAGAGTCCTCCCCAAACCCATCGTACTCGA CCCGAATTCGACCACTGAGTCAACCGATGGCTCGGTCCCTCAGAATCTCGGTCACAAAAGGATAATTTTAAGCATATCTGCACTCATTGCTATCGGTGCA GCAGCTGTGATTGTTGTTGGGGTGATCGCGATCACAGTACTTAATCTCAGAGTTCGATCGACTGAAACTTCTCGATCTGCTGCTGCATTAACTTTCTCTG CAAGCAATGATGGATTCAGCAGTTCGAGTAATAACTCGGATGCGAAAAATTCCGGAAAGCTTGTCATGTTTTCAGGTGACATTGACTTTAGTGCTGGATC ACATGCCTTGCTCAACAAGGATTGCGAACTCGGTCGTGGAGGATTCGGAGCAGTTTACCGTACTGTCCTTGGAGACGGAGGGCAGAATCCGGTAGCCATC AAGAAGCTTACTGTCTCGAGCCTTGTGAAGTCTCAAGATGATTTCGAAAGGGAAGTCAAGAAGCTTGGAAAAATAAGGCACCAGAATCTTGTGCAACTCG AAGGCTACTACTGGACTCCGTCGTTACAGCTGCTCATTTACGAGTTCCTATCCGGTGGATCTTTGTACAAGCATCTCCATGATGGAGGGAATATTCTTTC TTGGAATGAGAGATTCGATCTGATTCTTGGTACAGCAAAGGGGCTGGCTCATTTGCACCAATGTGGGATCATACATTACAACATCAAGTCGAGTAACATC CTAATCGATGGTTCATCGGGGGAGGCGAAAGTCGGAGACTTTGGCCTTGCAAGGCTGTTACCAATGCTGGACCGGTATGTCTTGAGCAGCAAGATTCAGA GCGCGCTAGGGTACATGGCACCCGAGTTCGCGTGCAGGACCGTGAAGATAACCGAGAAATGCGATGTGTATGGATTCGGTGTATTAGTTCTCGAGATTAT CACGGGTAGGAAGCCTGTGGAGTATATGGAAGATGATGTTGTGATGCTTTGTGACACGGTGAGGGCAGCATTGGAGGAAGGGAGGGCGGAGGATTGCATC GACGAGAGGCTCGAACGAGGTGGAGGGTTGTTGGCATCGGATGAGGTGGTACCAGTGGTGAAGTTGGGGTTGATTTGTACCTCGCAGGTGCCATCGAACC GGCCTGGTATGAGGGAGGTTGTTAACATATTGGAGATGATCCGATGCCCTTCTGAAGGACACAAATGA
AA sequence Show only first row Show all	>Lus10030526 pacid=23140621 polypeptide=Lus10030526 locus=Lus10030526.g ID=Lus10030526.BGIv1.0 annot-version=v1.0 MLKMGRKGRTPLLIVLLIAIFTCSSVLGYLSPSLNDDALGLIVFKSDLQDPGGKLASWNQDDDTPCNNWFGVKCNPRSNRVTELNLTGLSLSGRIGRGLL QLQFLRKLTLSSNNLTGSFPGELSNLQNLTAVDLTNNSFSGELPSDFFAQCGSLRAISLAGNRFSGKIPDSLSSCTSLVYVNFSSSQFSGSLPAGIWGLT GLRSVDFSGNSLEGGIPSGIERLNNLRAVNLSKNKFTGTIPDGIGRLFLLRTVDFSWNSFSGYLPRTMRSLGMCCYMSIGHNSLTGEVPSWIGEMKRLES LDLSMNNFSGRIPASIGKLGMLKVLNFSGNALSGWLPDSLSSCGSLTALDLSRNELSGWLPDFNSSSKFEYLDLSDNQLSGEIGSGIGYQSKLMVLDLSK NSLAGPVPGAIGKLKELGVLDLSDNKFNGSIPLEIGAAASLKELRLDSNFLSGQIPNSIGDCSKLTTLVASGNILSGPIPASMAKLTNLQYVDLSINTLS GTLPKQLANLPNIITFNISHNHLQGELPSGGFFNIISPSSVSGNPSLCGSVVNKTCQRVLPKPIVLDPNSTTESTDGSVPQNLGHKRIILSISALIAIGA AAVIVVGVIAITVLNLRVRSTETSRSAAALTFSASNDGFSSSSNNSDAKNSGKLVMFSGDIDFSAGSHALLNKDCELGRGGFGAVYRTVLGDGGQNPVAI KKLTVSSLVKSQDDFEREVKKLGKIRHQNLVQLEGYYWTPSLQLLIYEFLSGGSLYKHLHDGGNILSWNERFDLILGTAKGLAHLHQCGIIHYNIKSSNI LIDGSSGEAKVGDFGLARLLPMLDRYVLSSKIQSALGYMAPEFACRTVKITEKCDVYGFGVLVLEIITGRKPVEYMEDDVVMLCDTVRAALEEGRAEDCI DERLERGGGLLASDEVVPVVKLGLICTSQVPSNRPGMREVVNILEMIRCPSEGHK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56370			Leucine-rich repeat protein ki...		Lus10030526 [exp]	0	1
AT2G21050		LAX2	like AUXIN RESISTANT 2 (.1)		Lus10025057 [exp]	1.7	0.9137
AT3G56370			Leucine-rich repeat protein ki...		Lus10025139 [exp]	2.8	0.9147
AT3G22790			Kinase interacting (KIP1-like)...		Lus10006606 [exp]	9.2	0.8730
AT3G54650		FBL17	RNI-like superfamily protein (...		Lus10018769 [exp]	9.9	0.8743
AT3G56370			Leucine-rich repeat protein ki...		Lus10025223 [exp]	11.7	0.9144
AT4G24630			DHHC-type zinc finger family p...		Lus10028737 [exp]	13.5	0.8160
AT1G73460			Protein kinase superfamily pro...		Lus10026360 [exp]	18.4	0.8682
AT3G58650			unknown protein		Lus10016854 [exp]	23.7	0.8980
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10024521 [exp]	25.6	0.8937
AT5G26850			Uncharacterized protein (.1.2....		Lus10029842 [exp]	25.8	0.8853

Compare expression of checked genes

Lus10030526 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.