Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40630 150 / 4e-41 Uncharacterised conserved protein (UCP030365) (.1) AT5G05240 108 / 7e-26 Uncharacterised conserved protein (UCP030365) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029030 [exp] 142 / 1e-37 AT5G05240 313 / 4e-100 Uncharacterised conserved protein (UCP030365) (.1) Lus10034236 [exp] 141 / 1e-37 AT5G05240 312 / 9e-100 Uncharacterised conserved protein (UCP030365) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G091100 [exp] 214 / 5e-65 AT5G05240 259 / 3e-80 Uncharacterised conserved protein (UCP030365) (.1) Potri.019G058200 [exp] 138 / 2e-36 AT5G05240 301 / 2e-95 Uncharacterised conserved protein (UCP030365) (.1) Potri.013G157700 [exp] 54 / 1e-07 AT5G05240 103 / 8e-24 Uncharacterised conserved protein (UCP030365) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030527 pacid=23140583 polypeptide=Lus10030527 locus=Lus10030527.g ID=Lus10030527.BGIv1.0 annot-version=v1.0 ATGGAATTGCCTGATGAAGTCAATCCTGTCAATGTAAAAATAGACTTTAATCGTAAAGCTCGTGAGATGAATGATTCGATCAATGAGGCTTTACCGGATA GGGAACATAGTTATTCTCTAGTTGTCAATAGATGCAACAGCCATCTCCATGAGAAACGTGTGACATCTAGTAGCATCCAATTTGCCAGCTCTGCGAACCG GGATCGAGTTTCTAATTACTCAAACAAGGGAGGTCAGAAGCATAATTCAAGAGATATCTCTGGACGTGTGACTACAGATCCTTTGAAGATTTGGAGGGAC AGGAAGCAAAATCAGTTAGTATCTTCATCTTCTCGCTATGGAGGGATACCGGTGCCCAAGCCACGAGAGAAGAACGACGACATTTCGAAGAAAAGGACCG AACTTACTAAGAAAGAAGAGGTTGATAGATTCACAAAGATTGCAGCTCCAAGTGGACTGCTCAGTAACTTGAACCCTGGGATCATAAACTATGTCAGGAA CAGCAAACAAGTCCGGACGATAATTGAATCTTTGGTGAAGTCTGACAAGCTATCAAAGCAACCTATCAGTGTTTCTAATAGTCAATCTGCCGAGGTCAAC GATGTCTCTTGCCTAGCTTTCCAAGCTGCAAATGTTGCTTCAGAGTGGTTGAAGCTTCTTCGTCAAGACATCGAAGGCCGCCTCATTGCTTTGCAACGCA GCAAGAATAGAGTAAGAGAAGTCATAACCATTGACTTACCTCTTATCACATTGGAGAAACTCTCCACTACTTCCAACAAACAGAATGCTGCAATGCATAA GGCCAAATGGACCAAGTTGTTTGATCAAATGGATGAAGCACTCTCTCAACAGCAGCTGGACCTTGAAAGCTTGCTATACGAACTGAAAGCAATGCAGTTC CACTGCAATCAAGGGTTGCAGCATTCTCTTGACAAGGAAGAAAGCTATAAGAAAGAAGTGACAATGAGAGCAGCTGCAGCTTCAATCTACTCAACCTGCA AGTTTGTGAAGTCGACAAAGGAGAAGAATGATGTGCCTTGTTTCTGA
AA sequence Show only first row Show all	>Lus10030527 pacid=23140583 polypeptide=Lus10030527 locus=Lus10030527.g ID=Lus10030527.BGIv1.0 annot-version=v1.0 MELPDEVNPVNVKIDFNRKAREMNDSINEALPDREHSYSLVVNRCNSHLHEKRVTSSSIQFASSANRDRVSNYSNKGGQKHNSRDISGRVTTDPLKIWRD RKQNQLVSSSSRYGGIPVPKPREKNDDISKKRTELTKKEEVDRFTKIAAPSGLLSNLNPGIINYVRNSKQVRTIIESLVKSDKLSKQPISVSNSQSAEVN DVSCLAFQAANVASEWLKLLRQDIEGRLIALQRSKNRVREVITIDLPLITLEKLSTTSNKQNAAMHKAKWTKLFDQMDEALSQQQLDLESLLYELKAMQF HCNQGLQHSLDKEESYKKEVTMRAAAASIYSTCKFVKSTKEKNDVPCF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40630			Uncharacterised conserved prot...		Lus10030527 [exp]	0	1
AT5G02370			ATP binding microtubule motor ...		Lus10025349 [exp]	4.7	0.8792
AT5G46740		UBP21	ubiquitin-specific protease 21...		Lus10032623 [exp]	12.5	0.8307
AT5G22220	E2F_DP	ATE2FB, E2F1	E2F transcription factor 1 (.2...		Lus10005209 [exp]	14.7	0.8010
AT4G20160			unknown protein		Lus10038389 [exp]	18.1	0.8349
AT3G01710			TPX2 (targeting protein for Xk...		Lus10014571 [exp]	23.5	0.8465
AT1G05910			cell division cycle protein 48...		Lus10025576 [exp]	30.0	0.8122
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10011481 [exp]	40.1	0.8303
AT3G60190		ADL1E, ADL4, AD...	ENHANCED DISEASE RESISTANCE 3,...		Lus10040117 [exp]	42.8	0.8230
AT1G05910			cell division cycle protein 48...		Lus10027038 [exp]	43.5	0.8244
AT1G04030			unknown protein		Lus10003613 [exp]	44.6	0.8305

Compare expression of checked genes

Lus10030527 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.