Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05270 222 / 2e-74 Chalcone-flavanone isomerase family protein (.1.2) AT1G53520 55 / 3e-09 Chalcone-flavanone isomerase family protein (.1) AT5G66230 54 / 8e-09 Chalcone-flavanone isomerase family protein (.1.2) AT3G55120 51 / 7e-08 A11, CFI, TT5 TRANSPARENT TESTA 5, CHALCONE FLAVANONE ISOMERASE, Chalcone-flavanone isomerase family protein (.1) AT5G66220 47 / 1e-06 Chalcone-flavanone isomerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012878 [exp] 304 / 2e-106 AT5G05270 230 / 1e-76 Chalcone-flavanone isomerase family protein (.1.2) Lus10003311 [exp] 70 / 1e-14 AT3G55120 274 / 8e-94 TRANSPARENT TESTA 5, CHALCONE FLAVANONE ISOMERASE, Chalcone-flavanone isomerase family protein (.1) Lus10030310 [exp] 68 / 5e-14 AT3G55120 270 / 5e-92 TRANSPARENT TESTA 5, CHALCONE FLAVANONE ISOMERASE, Chalcone-flavanone isomerase family protein (.1) Lus10026174 [exp] 59 / 3e-10 AT1G53520 259 / 3e-84 Chalcone-flavanone isomerase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G057800 [exp] 233 / 1e-78 AT5G05270 270 / 6e-93 Chalcone-flavanone isomerase family protein (.1.2) Potri.011G101800 [exp] 69 / 3e-14 AT1G53520 282 / 4e-95 Chalcone-flavanone isomerase family protein (.1) Potri.010G213000 [exp] 68 / 4e-14 AT3G55120 300 / 1e-103 TRANSPARENT TESTA 5, CHALCONE FLAVANONE ISOMERASE, Chalcone-flavanone isomerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0560 [flax] [poplar] Chalcone-like PF02431 [flax] [poplar] Chalcone Chalcone-flavanone isomerase
Representative CDS sequence Show only first row Show all	>Lus10030529 pacid=23140597 polypeptide=Lus10030529 locus=Lus10030529.g ID=Lus10030529.BGIv1.0 annot-version=v1.0 ATGAGAATCACGGACATCGAGATACATTTCCTCCAAATCAAGTTCACGGCGATAGGAGTCTACCTCGACCCAAACGGCGTCGTCCAGCACCTCCAAACCT GGAAGGGCAAATCGGGGAAAGAGCTCGAACCAAACGACGACTTCTTCGACGCGGTAGCAACTTCCCCGGCGGAGAAGCTCATCCGCGTGGTGGTCATCAA AGAGATTAAAGGATCGCAGTACGGCGTCCAGCTGGAGAGCGCGGTGAGGGACCGGCTAGCGGAGGAGGACAAGTACGAGGAGGAAGAAGAATCGGAGCTG GAGAGAGTCACGGATTTCTTCCAGTCGAAGTATTTCAAGAAGGGATCCGTCGTCACTTTCCATTTCCCGGCGGCGGGTGGGAAGCTGGAGATCGGGGTCG CGGCGGAAGGGAAAGAGGAGGCGAAATTGGAGGTGGGGAATGTGAATGTTATTGAGACGATTAAGAAGTGGTATTTGGGAGGGACGAGGGGTGTTTCTCC GACGTTGATTTCGTCGTTGGCCGGTGGTTTGGCTGAGGTTCTGGCGAAATGA
AA sequence Show only first row Show all	>Lus10030529 pacid=23140597 polypeptide=Lus10030529 locus=Lus10030529.g ID=Lus10030529.BGIv1.0 annot-version=v1.0 MRITDIEIHFLQIKFTAIGVYLDPNGVVQHLQTWKGKSGKELEPNDDFFDAVATSPAEKLIRVVVIKEIKGSQYGVQLESAVRDRLAEEDKYEEEEESEL ERVTDFFQSKYFKKGSVVTFHFPAAGGKLEIGVAAEGKEEAKLEVGNVNVIETIKKWYLGGTRGVSPTLISSLAGGLAEVLAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05270			Chalcone-flavanone isomerase f...		Lus10030529 [exp]	0	1
AT1G03905		ABCI19	ATP-binding cassette I19, P-lo...		Lus10022909 [exp]	1.0	0.8352
AT1G44960			SNARE associated Golgi protein...		Lus10028709 [exp]	17.3	0.8061
AT3G60890		ZPR2	LITTLE ZIPPER 2, protein bindi...		Lus10006673 [exp]	18.0	0.8195
AT3G14920			Peptide-N4-(N-acetyl-beta-gluc...		Lus10017926 [exp]	26.5	0.8272
AT3G48460			GDSL-like Lipase/Acylhydrolase...		Lus10033302 [exp]	27.3	0.7922
AT3G52500			Eukaryotic aspartyl protease f...		Lus10016967 [exp]	32.0	0.8048
AT5G05270			Chalcone-flavanone isomerase f...		Lus10012878 [exp]	40.9	0.7289
AT4G02380		SAG21, ATLEA5	Arabidopsis thaliana late embr...		Lus10029634 [exp]	41.8	0.7791
AT2G47590		PHR2	photolyase/blue-light receptor...		Lus10007880 [exp]	49.4	0.7933
AT4G13840			HXXXD-type acyl-transferase fa...		Lus10016638 [exp]	51.6	0.7842

Compare expression of checked genes

Lus10030529 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.