Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48310 170 / 1e-48 CYP71A22 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) AT3G48280 167 / 7e-48 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT3G48270 166 / 3e-47 CYP71A26 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) AT3G48320 163 / 4e-46 CYP71A21 "cytochrome P450, family 71, subfamily A, polypeptide 21", cytochrome P450, family 71, subfamily A, polypeptide 21 (.1) AT3G48290 162 / 5e-46 CYP71A24 "cytochrome P450, family 71, subfamily A, polypeptide 24", cytochrome P450, family 71, subfamily A, polypeptide 24 (.1.2) AT4G13310 156 / 2e-44 CYP71A20 "cytochrome P450, family 71, subfamily A, polypeptide 20", cytochrome P450, family 71, subfamily A, polypeptide 20 (.1.2) AT2G30770 156 / 1e-43 CYP71A13 cytochrome P450, family 71, subfamily A, polypeptide 13 (.1) AT3G48300 155 / 2e-43 CYP71A23 "cytochrome P450, family 71, subfamily A, polypeptide 23", cytochrome P450, family 71, subfamily A, polypeptide 23 (.1) AT4G13290 154 / 6e-43 CYP71A19 "cytochrome P450, family 71, subfamily A, polypeptide 19", cytochrome P450, family 71, subfamily A, polypeptide 19 (.1) AT4G20240 150 / 1e-41 CYP71A28, CYP71A27 "cytochrome P450, family 71, subfamily A, polypeptide 27", cytochrome P450, family 71, subfamily A, polypeptide 27 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012879 [exp] 581 / 0 AT3G26330 409 / 6e-138 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10031674 [exp] 400 / 2e-137 AT3G26300 399 / 3e-134 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10027397 [exp] 312 / 7e-107 AT3G48310 145 / 1e-40 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) Lus10039063 [exp] 291 / 2e-94 AT3G26300 392 / 3e-131 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10038796 [exp] 253 / 4e-80 AT3G26300 364 / 5e-121 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10016601 [exp] 224 / 4e-69 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10009903 [exp] 218 / 8e-67 AT5G57260 376 / 1e-125 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) Lus10030708 [exp] 216 / 5e-66 AT3G26210 390 / 6e-131 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10019157 [exp] 216 / 7e-66 AT3G48300 358 / 1e-118 "cytochrome P450, family 71, subfamily A, polypeptide 23", cytochrome P450, family 71, subfamily A, polypeptide 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G223500 [exp] 227 / 2e-70 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G131051 [exp] 215 / 2e-67 AT3G48280 218 / 9e-67 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Potri.007G074850 [exp] 215 / 1e-65 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074900 [exp] 214 / 3e-65 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G075000 [exp] 213 / 5e-65 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130800 [exp] 211 / 3e-64 AT3G26300 359 / 4e-119 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130850 [exp] 210 / 9e-64 AT3G26300 361 / 5e-120 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074300 [exp] 205 / 7e-62 AT3G26300 343 / 6e-113 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.012G089900 [exp] 196 / 2e-58 AT3G48280 429 / 1e-146 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Potri.001G365100 [exp] 195 / 4e-58 AT3G26300 347 / 2e-114 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10030530 pacid=23140772 polypeptide=Lus10030530 locus=Lus10030530.g ID=Lus10030530.BGIv1.0 annot-version=v1.0 ATGGCCTCCTCTGCTTCTCTCACATTCACCGCCCCCAAACCAACATCCTCCTCCTCCTCCGCGGTCCCAACATTCCGGCCAATATTCTCCAGTAATCTCC CTTCCCGCCGCCGCCTTCCCGCCAAAATCCACTGCCAAAAGAAATCACTCCCGCCGGGCCCACCAAAGCTTCCCATAATCGGAAACCTCCACAACATGAT CGGATCCCTCCCGCACCAAGCCCTCCGCGACCTAGCCATCCAATACGGCCCCTTGATCCACCTCCAGCTCGGAGAAATCTCCGCCGCCGTCGTATCCAAT CCGGCGATGGCGCAGGAGATCATGAAAACACACGACTTAGTCTTCGCCGACCGGCCCAGACTCCTCGCCTCCGAGATCGCCACGTGGGGCAGCCAGGACA TCGCCTTCTCCCCTCACGGCGAGTACTGGAAGCAGATGAAGCGGATATCGCTTACGGAGCTTTTGGGGCCTAGAAAGGTGAAATCTTTTAGGGCGATTCG CGAATCGGAGGTTTCCGATCTGATCGAATCGGTCAGGAAAATTTCGAATTCGAATAAGGCGGTGAATATTACGGAAATGGTTATGAATGTTACCAACGCG ATCACCTGTAAGACGGCGTTTGGGTACCAGTGTACGGATCAGGATGAGTTCATCGGATTGACTAAAGAGGCCGTGTCGGCGGCGGCTGGATTTGGGATCA CCGATGTTTATCCGTCGCTGGAGTTTCTTCAGGGGATTACAGGGGTGAAGAATAAGTTGCTGAAGTTGAGGAACGGTCTGGATCGGATCTTCGATAAGAT CATCAAGGAGCACAAGGACAAAATGGTCAATCGTGGAGGACTTGAATCCGAAGATGATGAGGATTTAATGGATATTCTGTTGAGAATTCAGGGGAGTAAG AGCTTGAAATGTCCGATTACAAGCACAAACATCAAAGCAGTCCTGGTAGGGATTGTGTGGTGGCGGGTTACGAGATTCCGGAGAAGACGAAGGTGA
AA sequence Show only first row Show all	>Lus10030530 pacid=23140772 polypeptide=Lus10030530 locus=Lus10030530.g ID=Lus10030530.BGIv1.0 annot-version=v1.0 MASSASLTFTAPKPTSSSSSAVPTFRPIFSSNLPSRRRLPAKIHCQKKSLPPGPPKLPIIGNLHNMIGSLPHQALRDLAIQYGPLIHLQLGEISAAVVSN PAMAQEIMKTHDLVFADRPRLLASEIATWGSQDIAFSPHGEYWKQMKRISLTELLGPRKVKSFRAIRESEVSDLIESVRKISNSNKAVNITEMVMNVTNA ITCKTAFGYQCTDQDEFIGLTKEAVSAAAGFGITDVYPSLEFLQGITGVKNKLLKLRNGLDRIFDKIIKEHKDKMVNRGGLESEDDEDLMDILLRIQGSK SLKCPITSTNIKAVLVGIVWWRVTRFRRRRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48310		CYP71A22	"cytochrome P450, family 71, s...		Lus10030530 [exp]	0	1
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Lus10030531 [exp]	1.7	0.9943
AT5G11880			Pyridoxal-dependent decarboxyl...		Lus10004154 [exp]	3.2	0.9922
AT2G26530		AR781	Protein of unknown function (D...		Lus10021757 [exp]	5.1	0.9812
AT3G48320		CYP71A21	"cytochrome P450, family 71, s...		Lus10043311 [exp]	6.9	0.9909
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10014191 [exp]	7.6	0.9809
AT1G45063			copper ion binding;electron ca...		Lus10006657 [exp]	9.9	0.9700
AT1G13080		CYP71B2	"cytochrome P450, family 71, s...		Lus10043312 [exp]	11.8	0.9858
AT3G07310			Protein of unknown function (D...		Lus10002343 [exp]	12.2	0.9897
AT2G46620			P-loop containing nucleoside t...		Lus10008834 [exp]	12.7	0.9828
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10021137 [exp]	13.6	0.9860

Compare expression of checked genes

Lus10030530 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.