Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40620 256 / 1e-81 bZIP AtbZIP18 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT1G06850 191 / 4e-57 bZIP ATBZIP52 basic leucine-zipper 52 (.1.2) AT2G31370 161 / 5e-45 bZIP AtbZIP59, PosF21 Basic-leucine zipper (bZIP) transcription factor family protein AT1G06070 160 / 2e-44 bZIP AtbZIP69 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT4G38900 159 / 5e-43 bZIP AtbZIP29 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT1G43700 146 / 6e-40 bZIP SUE3, AtbZIP51, VIP1 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) AT2G21230 145 / 3e-38 bZIP AtbZIP30 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT3G26230 92 / 7e-20 CYP71B24 "cytochrome P450, family 71, subfamily B, polypeptide 24", cytochrome P450, family 71, subfamily B, polypeptide 24 (.1) AT3G53280 92 / 9e-20 CYP71B5 cytochrome p450 71b5 (.1) AT3G44250 91 / 2e-19 CYP71B38 "cytochrome P450, family 71, subfamily B, polypeptide 38", cytochrome P450, family 71, subfamily B, polypeptide 38 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012881 [exp] 585 / 0 AT2G40620 290 / 7e-96 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10042211 [exp] 249 / 5e-79 AT2G40620 277 / 4e-91 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10009907 [exp] 233 / 2e-73 AT1G06850 270 / 2e-89 basic leucine-zipper 52 (.1.2) Lus10024204 [exp] 231 / 8e-73 AT1G06850 271 / 5e-90 basic leucine-zipper 52 (.1.2) Lus10008605 [exp] 231 / 6e-72 AT2G40620 276 / 1e-90 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10018899 [exp] 177 / 9e-52 AT1G43700 287 / 7e-96 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10028595 [exp] 175 / 5e-51 AT1G43700 289 / 1e-96 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10012879 [exp] 173 / 5e-48 AT3G26330 409 / 6e-138 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10042057 [exp] 165 / 6e-45 AT4G38900 522 / 0.0 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G091400 [exp] 250 / 1e-79 AT2G40620 300 / 2e-100 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.019G130000 [exp] 249 / 1e-78 AT2G40620 289 / 4e-95 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.013G156900 [exp] 240 / 6e-75 AT2G40620 291 / 5e-96 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.002G069500 [exp] 179 / 3e-52 AT1G43700 238 / 4e-76 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Potri.005G190700 [exp] 176 / 2e-51 AT1G43700 219 / 2e-69 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Potri.017G027400 [exp] 164 / 9e-46 AT1G06070 471 / 2e-165 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.007G130800 [exp] 159 / 4e-44 AT1G06070 392 / 9e-135 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.004G163800 [exp] 162 / 6e-44 AT4G38900 425 / 1e-142 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Potri.009G125400 [exp] 161 / 2e-43 AT4G38900 481 / 1e-164 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Potri.008G223500 [exp] 102 / 3e-23 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor CL0018 [flax] [poplar] PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10030531 pacid=23140535 polypeptide=Lus10030531 locus=Lus10030531.g ID=Lus10030531.BGIv1.0 annot-version=v1.0 ATGCATTTCGAGCTGATTCCGTTCGGTGCTGGAAGGAGGATATGTCCCGGGATTGCGTTCGGGATGGCGAATGTGGAGCTTCCCGTGGCGCAGCTGCTTT ACCATTTCGACTGGGAGTTGCCGGATGGGGTTGAAGATCTTGATATGACGGAGGATTTTGCGGCGACGATGGGGAGGAAGAATCCGTTATGGTTGGTTCC TAGGGTTCATCGTTTTTCTAATGTGAGAGAGAAGGACGTTGAAGAGAAACATATGATTAGTACTGATGATCCCATTCCAAATCCAAACACCACGGCGGAG TCGCCCAGCGCCAATGGCGGCAATTCCCAAACCCCCAGGGGATCCTTCCACCGGAGGGCATTCTCCGAGTTCCAATTCCGCATCCCGGACGATCTAGATC TCGACCCGCTCGACCCCCCCTCGGTGACCTCTTTCGACGAGCTCGGATCCGAGGATGACCTCTTCTACACCTACATGGACATGGGAGGAGGAAGCCTCGG ATCCAAACCCGACGACATTGATCAGAAAATCGACGAAGCAGCCGAGAATCCGAGCTCGAGCGGCGGAGGAGGAGGAGGAGGAAACAAAGGCGTGAAGGGG AAACATAGGCACAGCAATTCGGTGGACGGATCTTCATTTGTGCAGTCGATTGAAGCTAAGAAAGCTATGGGTCCTGATAAGCTTGCTGAACTCTGGAACA TGGATCCCAAACGAGCCAAAAGGATCATTGCGAATCGGCAGTCTGCTGCGAGATCGAAGGAGAGAAAAGCTCGGTATATATTAGAGTTGGAGAGGAATGT GCAGAACCTTCAGGCGGAAGCAGCTACACTTGGGGCACAACTGACATTATTCCAGAGAGATACATTGGGTCTGACTAACGAGAATGCGGACCTGAAGCTT CGGGTGCAGGCCATGGAACAGCAGGCTCAGCTACGCGAAGCTGTAAATGATGCACTGAGAAAGGAAGTAGAGATGCTGAAGATAGCTACGGGCGAAAGAA CGGCGCAACAACAACTCGAATATCCCTACAACATGGGAATGCACCATCAACATCATCACCTCTCTTACAACCATCCTCCTTTCTTCCCACTCCATCAGCA GCAACCTGGAAATGTCATGTATAACCCTCACAGCATCCAAGTCCCACAGTTCCACCCTAATAATAATCTCCAGAGTTCGCGCCACCTCCCAACTGTAACG GCTGCTCTCCCCAATCATCATGGCCGTGGATTTCCTGAGATGTTGCCACACGAGAGACTCCAAGGACTCGACATCAGCGGCGGAGGAGGAAGAAGCTACG TTGTGGTGAAATCTGAAGGACCCTCCATTTCCGCCAGTGAGAGCAACAATTAA
AA sequence Show only first row Show all	>Lus10030531 pacid=23140535 polypeptide=Lus10030531 locus=Lus10030531.g ID=Lus10030531.BGIv1.0 annot-version=v1.0 MHFELIPFGAGRRICPGIAFGMANVELPVAQLLYHFDWELPDGVEDLDMTEDFAATMGRKNPLWLVPRVHRFSNVREKDVEEKHMISTDDPIPNPNTTAE SPSANGGNSQTPRGSFHRRAFSEFQFRIPDDLDLDPLDPPSVTSFDELGSEDDLFYTYMDMGGGSLGSKPDDIDQKIDEAAENPSSSGGGGGGGNKGVKG KHRHSNSVDGSSFVQSIEAKKAMGPDKLAELWNMDPKRAKRIIANRQSAARSKERKARYILELERNVQNLQAEAATLGAQLTLFQRDTLGLTNENADLKL RVQAMEQQAQLREAVNDALRKEVEMLKIATGERTAQQQLEYPYNMGMHHQHHHLSYNHPPFFPLHQQQPGNVMYNPHSIQVPQFHPNNNLQSSRHLPTVT AALPNHHGRGFPEMLPHERLQGLDISGGGGRSYVVVKSEGPSISASESNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Lus10030531 [exp]	0	1
AT3G48310		CYP71A22	"cytochrome P450, family 71, s...		Lus10030530 [exp]	1.7	0.9943
AT3G48320		CYP71A21	"cytochrome P450, family 71, s...		Lus10043311 [exp]	2.0	0.9958
AT3G07310			Protein of unknown function (D...		Lus10002343 [exp]	3.5	0.9947
AT5G11880			Pyridoxal-dependent decarboxyl...		Lus10004154 [exp]	3.7	0.9931
AT1G13080		CYP71B2	"cytochrome P450, family 71, s...		Lus10043312 [exp]	4.2	0.9934
					Lus10005629 [exp]	6.0	0.9926
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10001322 [exp]	6.3	0.9938
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10012879 [exp]	6.3	0.9942
AT5G60335			Thioesterase superfamily prote...		Lus10031971 [exp]	7.5	0.9887
AT5G39160			RmlC-like cupins superfamily p...		Lus10032015 [exp]	10.0	0.9886

Compare expression of checked genes

Lus10030531 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.