Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16790 317 / 1e-110 AtTHO7 Tho complex subunit 7/Mft1p (.1) AT3G02950 310 / 1e-107 AtTHO7 Tho complex subunit 7/Mft1p (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012882 [exp] 167 / 3e-53 AT3G02950 103 / 4e-29 Tho complex subunit 7/Mft1p (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G080200 [exp] 374 / 1e-132 AT5G16790 315 / 2e-109 Tho complex subunit 7/Mft1p (.1) Potri.013G082900 [exp] 310 / 2e-107 AT5G16790 277 / 1e-94 Tho complex subunit 7/Mft1p (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05615 [flax] [poplar] THOC7 Tho complex subunit 7
Representative CDS sequence Show only first row Show all	>Lus10030532 pacid=23140721 polypeptide=Lus10030532 locus=Lus10030532.g ID=Lus10030532.BGIv1.0 annot-version=v1.0 ATGTTGGCTAAAGGAAGGAAAGTCTCCGGTAGGGGAGAAACAGTAGCAGCAAACTATGCATTCGGACCTTTGGAGGATGACGCGATCATCAAACACAGAC TACTCACCCGCACCACAACCACCAGGGGCGAACCGCCATTGAAGAAGCTTCAAAAGAAGTTCTCCTCTTTCGTTATCGAGGCGGACAAGGACGAGGACAA CTACAACGACTGCTTGAGACTGTCCAAGGCCTTCTTGCAGGAGCTGAACACTTTCGAGATTCCTCTCCTTAAGAGCAAGGTCGTCATCGATGCCAACGTC AGGGAGAAGGAGAACTTCACCGATTTGAAAGATGAGATAAACAAGCAGATCTTGCAGGCTGAAACTGATATAGAGGATCTGAAAAAGCAGCTTGAAGAGA GTAAAGTTGAGAGGCGGCACAAGGAAGAGTGTGAGGCTATCAGGAAGCTGATTGCTATGCAGCCCCCTAGATCCGAGACGCAGAAGGTAATTACGGAGCT TGAGAGGGAGATTGCGGCGTTGGAGACTGAGAACACGGTTGGTTCGAGGATGGTGGAGTTGAGGAAGAAACAGTTTGCTCTTCTGCTTCATGTGGTTGAT GAACTGCAAAATACCATAGAGGAAGACCAGAAGAGCTTAATGGAGGAAACTAGAATGGCAATCGAAGATCAGAAGAGCTTGACGGAGGATGCATCTGCAA CCTCGGAGGCGATGGCCATCGATTAG
AA sequence Show only first row Show all	>Lus10030532 pacid=23140721 polypeptide=Lus10030532 locus=Lus10030532.g ID=Lus10030532.BGIv1.0 annot-version=v1.0 MLAKGRKVSGRGETVAANYAFGPLEDDAIIKHRLLTRTTTTRGEPPLKKLQKKFSSFVIEADKDEDNYNDCLRLSKAFLQELNTFEIPLLKSKVVIDANV REKENFTDLKDEINKQILQAETDIEDLKKQLEESKVERRHKEECEAIRKLIAMQPPRSETQKVITELEREIAALETENTVGSRMVELRKKQFALLLHVVD ELQNTIEEDQKSLMEETRMAIEDQKSLTEDASATSEAMAID

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16790		AtTHO7	Tho complex subunit 7/Mft1p (....		Lus10030532 [exp]	0	1
AT3G12620			Protein phosphatase 2C family ...		Lus10030302 [exp]	4.1	0.8397
AT1G64520		RPN12A	regulatory particle non-ATPase...		Lus10001813 [exp]	5.5	0.8050
AT5G40870		UKL1, ATUK/UPRT...	URIDINE KINASE-LIKE 1, uridine...		Lus10035216 [exp]	7.3	0.7395
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10003772 [exp]	8.9	0.8207
AT4G25680			PPPDE putative thiol peptidase...		Lus10014960 [exp]	16.8	0.7909
AT5G37370		ATSRL1	PRP38 family protein (.1.2.3.4...		Lus10010963 [exp]	16.9	0.7754
AT1G16880		ACR11	ACT domain repeats 11, uridyly...		Lus10033394 [exp]	20.4	0.7297
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10021746 [exp]	22.3	0.7697
AT5G13870		EXGT-A4, XTH5, ...	endoxyloglucan transferase A4,...		Lus10040121 [exp]	24.5	0.7561
AT5G03560			Tetratricopeptide repeat (TPR)...		Lus10001125 [exp]	33.2	0.7574

Compare expression of checked genes

Lus10030532 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.