Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56340 132 / 8e-41 Ribosomal protein S26e family protein (.1) AT2G40590 130 / 3e-40 Ribosomal protein S26e family protein (.1) AT2G40510 130 / 4e-40 Ribosomal protein S26e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012883 [exp] 160 / 6e-49 AT3G10920 356 / 1e-123 MATERNAL EFFECT EMBRYO ARREST 33, ARABIDOPSIS MANGANESE SUPEROXIDE DISMUTASE 1, manganese superoxide dismutase 1 (.1.2) Lus10034223 [exp] 149 / 4e-47 AT2G40510 182 / 2e-60 Ribosomal protein S26e family protein (.1) Lus10029042 [exp] 149 / 4e-47 AT2G40510 182 / 2e-60 Ribosomal protein S26e family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G057000 [exp] 143 / 5e-45 AT3G56340 132 / 6e-41 Ribosomal protein S26e family protein (.1) Potri.013G093700 [exp] 140 / 4e-44 AT3G56340 130 / 3e-40 Ribosomal protein S26e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01283 [flax] [poplar] Ribosomal_S26e Ribosomal protein S26e
Representative CDS sequence Show only first row Show all	>Lus10030533 pacid=23140779 polypeptide=Lus10030533 locus=Lus10030533.g ID=Lus10030533.BGIv1.0 annot-version=v1.0 ATGACGTTCAAGCGAAGGAATGGAGGTCGCAACAAGCACGGCCGTGGCCACACCAAGTTCATCCGCTGCTCCAACTGCGGCAAATGCTGCCCCAAGGACA AGGCTATCAAGAGGTTTCTAGTGAGGAACATCGTTGAGCAAGCTGCAGTCCGTGATGTTCAGGAGGCTTGCGTCTATGACGGATATGTTCTCCCGAAGCT TTACGTTAAGATGCAATACTGTGTCTCCTGTGCTATCCACTCTCGTGTTGTGAGGGTGCGATCAACTGTTGATCGTAGGAAGCGTGACCCACCCCAGCGT TTCCAGAGGCGCAAGGAGGACAACAAGCCTGGCCAAGGTGCAGCAGGTGGCCCTGGAGCTCGCCCTGCCGGTGCTCCAGCTCCGGTCCGTGCTTAA
AA sequence Show only first row Show all	>Lus10030533 pacid=23140779 polypeptide=Lus10030533 locus=Lus10030533.g ID=Lus10030533.BGIv1.0 annot-version=v1.0 MTFKRRNGGRNKHGRGHTKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYVLPKLYVKMQYCVSCAIHSRVVRVRSTVDRRKRDPPQR FQRRKEDNKPGQGAAGGPGARPAGAPAPVRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40510			Ribosomal protein S26e family ...		Lus10030533 [exp]	0	1
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Lus10032918 [exp]	1.7	0.9581
AT1G74050			Ribosomal protein L6 family pr...		Lus10038775 [exp]	3.2	0.9531
AT3G49010		RSU2, ATBBC1	40S RIBOSOMAL PROTEIN, breast ...		Lus10005586 [exp]	4.9	0.9336
AT5G48760			Ribosomal protein L13 family p...		Lus10007137 [exp]	5.5	0.9412
AT5G48760			Ribosomal protein L13 family p...		Lus10016679 [exp]	5.9	0.9265
AT2G35790			unknown protein		Lus10040379 [exp]	6.3	0.9123
AT3G49010		RSU2, ATBBC1	40S RIBOSOMAL PROTEIN, breast ...		Lus10013719 [exp]	7.0	0.9153
AT3G05590		RPL18	ribosomal protein L18 (.1)		Lus10031485 [exp]	9.8	0.9188
AT4G12060			Double Clp-N motif protein (.1...		Lus10031694 [exp]	10.0	0.8871
AT4G12060			Double Clp-N motif protein (.1...		Lus10031116 [exp]	10.1	0.8584

Compare expression of checked genes

Lus10030533 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.