Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10920 242 / 6e-81 MSD1, MEE33, ATMSD1 MATERNAL EFFECT EMBRYO ARREST 33, ARABIDOPSIS MANGANESE SUPEROXIDE DISMUTASE 1, manganese superoxide dismutase 1 (.1.2) AT3G56350 209 / 4e-68 Iron/manganese superoxide dismutase family protein (.1) AT5G23310 67 / 3e-13 FSD3 Fe superoxide dismutase 3 (.1) AT5G51100 63 / 2e-11 FSD2 Fe superoxide dismutase 2 (.1) AT4G25100 42 / 0.0001 ATFSD1, FSD1 ARABIDOPSIS FE SUPEROXIDE DISMUTASE 1, Fe superoxide dismutase 1 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012883 [exp] 348 / 9e-121 AT3G10920 356 / 1e-123 MATERNAL EFFECT EMBRYO ARREST 33, ARABIDOPSIS MANGANESE SUPEROXIDE DISMUTASE 1, manganese superoxide dismutase 1 (.1.2) Lus10034222 [exp] 297 / 2e-102 AT3G10920 370 / 2e-131 MATERNAL EFFECT EMBRYO ARREST 33, ARABIDOPSIS MANGANESE SUPEROXIDE DISMUTASE 1, manganese superoxide dismutase 1 (.1.2) Lus10017378 [exp] 52 / 1e-07 AT5G23310 368 / 5e-129 Fe superoxide dismutase 3 (.1) Lus10026881 [exp] 50 / 4e-07 AT5G51100 373 / 3e-130 Fe superoxide dismutase 2 (.1) Lus10010174 [exp] 49 / 1e-06 AT5G23310 359 / 1e-125 Fe superoxide dismutase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G092600 [exp] 243 / 2e-81 AT3G10920 370 / 6e-132 MATERNAL EFFECT EMBRYO ARREST 33, ARABIDOPSIS MANGANESE SUPEROXIDE DISMUTASE 1, manganese superoxide dismutase 1 (.1.2) Potri.019G057300 [exp] 234 / 9e-78 AT3G10920 360 / 6e-128 MATERNAL EFFECT EMBRYO ARREST 33, ARABIDOPSIS MANGANESE SUPEROXIDE DISMUTASE 1, manganese superoxide dismutase 1 (.1.2) Potri.005G089600 [exp] 62 / 3e-11 AT5G23310 340 / 1e-118 Fe superoxide dismutase 3 (.1) Potri.012G112301 [exp] 57 / 5e-10 AT5G51100 221 / 2e-72 Fe superoxide dismutase 2 (.1) Potri.015G110400 [exp] 54 / 3e-08 AT5G51100 335 / 3e-115 Fe superoxide dismutase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02777 [flax] [poplar] Sod_Fe_C Iron/manganese superoxide dismutases, C-terminal domain PF00081 [flax] [poplar] Sod_Fe_N Iron/manganese superoxide dismutases, alpha-hairpin domain
Representative CDS sequence Show only first row Show all	>Lus10030534 pacid=23140565 polypeptide=Lus10030534 locus=Lus10030534.g ID=Lus10030534.BGIv1.0 annot-version=v1.0 ATGGCGATCCGCTCTCTCTTCTCTCGCAAATCCCTTGCCGGATTATCGGCCGTATCAAAAACATCCCCCTCCGTCGTCCTAGGTCTCCGGCCTCTCTCTC AATCTAGAGACCTGACGACGGCGTCTCTTCCCGATCTCCCTTACGACTACGGCGCCTTGGAGCCGGTGATTTCCGGTGATATTATGAAGCTCCATCACCA GAAGCACCACCAGGCCTACGTCATCAACTACAACAAGGCTCTCGAGCAGCTCCACGAAGCTACCCTCAAGGGCGATGCCGGTACCGTTGTTAAGCTCCAG AGCGCCATCAAGTTCAATGGCGGAGAATGTTGTTCAAAATGGATGAAGATAAACGAGTTATCCCTTCGTGCAGGTCACGTTAACCACTCAATCTTCTGGA AGAATCTTGCTCCTGTTCGTGAAGGAGGTGGTGAACCCCCACATAGTTCCTTGGGATGGGCTATTGACTCTCATTTCGGCTCCATTGAAGCACTAATACA AAAAATGAATGCTGAAGGTGCTGCTCTTCAAGGCTCTGGATGGGTGGTAAGTAACTGTACCGCTTCCATTAATGGTTTTAGTTACCTAGCTGTTTCAGCT GCGTTGGTTAACCATTTTTCCTATTCGGCCTTGCAGTGGCTAGGTCTTGACAAGGACACAAAGAAACTTGTGGTTGAGACTACTGCTAACCAGGTAAATC AATAA
AA sequence Show only first row Show all	>Lus10030534 pacid=23140565 polypeptide=Lus10030534 locus=Lus10030534.g ID=Lus10030534.BGIv1.0 annot-version=v1.0 MAIRSLFSRKSLAGLSAVSKTSPSVVLGLRPLSQSRDLTTASLPDLPYDYGALEPVISGDIMKLHHQKHHQAYVINYNKALEQLHEATLKGDAGTVVKLQ SAIKFNGGECCSKWMKINELSLRAGHVNHSIFWKNLAPVREGGGEPPHSSLGWAIDSHFGSIEALIQKMNAEGAALQGSGWVVSNCTASINGFSYLAVSA ALVNHFSYSALQWLGLDKDTKKLVVETTANQVNQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10920		MSD1, MEE33, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10030534 [exp]	0	1
AT3G50390			Transducin/WD40 repeat-like su...		Lus10016779 [exp]	1.0	0.9902
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10038904 [exp]	1.7	0.9877
					Lus10002596 [exp]	2.4	0.9883
AT5G25940			early nodulin-related (.1)		Lus10030052 [exp]	3.2	0.9870
					Lus10018421 [exp]	3.5	0.9876
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10015028 [exp]	3.7	0.9810
AT1G72360	AP2_ERF	AtERF73, HRE1	HYPOXIA RESPONSIVE ERF \(ETHYL...		Lus10008214 [exp]	6.9	0.9839
AT4G33070			Thiamine pyrophosphate depende...		Lus10015291 [exp]	6.9	0.9733
AT3G48660			Protein of unknown function (D...		Lus10003120 [exp]	7.5	0.9793
AT5G54960		PDC2	pyruvate decarboxylase-2 (.1)		Lus10005048 [exp]	7.7	0.9778

Compare expression of checked genes

Lus10030534 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.