Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56330 523 / 0 N2,N2-dimethylguanosine tRNA methyltransferase (.1) AT5G15810 72 / 2e-13 N2,N2-dimethylguanosine tRNA methyltransferase (.1) AT3G02320 72 / 3e-13 N2,N2-dimethylguanosine tRNA methyltransferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012884 [exp] 622 / 0 AT3G56330 431 / 4e-150 N2,N2-dimethylguanosine tRNA methyltransferase (.1) Lus10029044 [exp] 588 / 0 AT3G56330 508 / 5e-179 N2,N2-dimethylguanosine tRNA methyltransferase (.1) Lus10034220 [exp] 94 / 2e-22 AT3G56330 94 / 1e-22 N2,N2-dimethylguanosine tRNA methyltransferase (.1) Lus10020290 [exp] 76 / 2e-14 AT3G02320 890 / 0.0 N2,N2-dimethylguanosine tRNA methyltransferase (.1) Lus10005696 [exp] 42 / 0.0007 AT5G15810 549 / 0.0 N2,N2-dimethylguanosine tRNA methyltransferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G093500 [exp] 531 / 0 AT3G56330 533 / 0.0 N2,N2-dimethylguanosine tRNA methyltransferase (.1) Potri.017G099200 [exp] 72 / 4e-13 AT3G02320 918 / 0.0 N2,N2-dimethylguanosine tRNA methyltransferase (.1) Potri.004G117900 [exp] 71 / 5e-13 AT3G02320 915 / 0.0 N2,N2-dimethylguanosine tRNA methyltransferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF02005 [flax] [poplar] TRM N2,N2-dimethylguanosine tRNA methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10030535 pacid=23140537 polypeptide=Lus10030535 locus=Lus10030535.g ID=Lus10030535.BGIv1.0 annot-version=v1.0 ATGTTAAGCCTCTACTTTGTCCCCAAAACCCTATCCCTTCATTTCTCTACCGGATCTCCGAAATGGGGAACTTCATCATCATCGCCGTCTAACGACCGGA GGTTTAAGGTGAACTGCTGCAGTCCAGAGCGGCAAACGGAGAGAGGAGTCGAGTTCGAAACGGGAGGGGCATTCTACCGCCATGAGAGCTCGACGGGGCG AGATTTGGGAGTTTTGGCCGCTTCGATTTACAGGCGATCCAATGGGAGCCTGCGAGTGCTGGACGCGATGTGCGGGTGCGGGATTCGGTCGTGCCGGTAT TTGATGGAAGCTGAAGCGGATTTCGTGATGGCGAACGATGCAAATGATGAGTACAGGGCGCTGATTGAAGGGAATTTGAATCGAGCGGTGGTGGACGAAG AGAAGAAGAGATGGGCGGTTTGTCATTCTGAAGCGAACAGGGTTCTCTCTGAGCGTTACTTGGAGAGGGATTTTTTCGATTTGATTGATATCGATTCGTT TGGGAGCGAGTCTGCTTTCTTGAGGTCTGCGATGCTGACTTTGAGATTGGGTGGGTTGCTTTACCTCACTAGCACTGATGGATACACCTCAGGCGGCCAC CGGCCTCATCATTCATTGGATGCATATGGAGCATTTGTTCGTCCGTTGCCATTTTCGAATGAGATTGCTCTGAGAATGCTTATCGGTGGAGCTGTCCGTG AAGCAGCGGTGTTAGGCTACCATGTCACGCCATTGTTCTCGTACTATGCGTACCATGGACCAGTTTTCCGTGTCATGCTCAGACTGAAACGCGAGAAGCT TCATGAGAATAGGGACTATGGCTTCATTGGTTACTGCAACCGTTGCGGGCATTCTCAACCATTTTCATGGGAGGAGCTTGGGAAGATTGGTTGCTCCTGT CGCAACTCAGAGGTATCTCATCAGCCATTCGTAGTGTCGGGACCGATGTGGATAGGACCTCTTCATAGCAGCGATTACATCACACAGATGTTGAATTTGG CAGCAGAATGGGGATGGATTGGAAATGGTAGTATAGATTCTCACCTGGAAAAGCTTCTGAACCAGATGTTGGATGAAAGTGACCCGAGATTACTGCCTGG ATACATCAAACTGGACGAGATTACGAAACGAGCGAAAATCAATGGCCCTCCATTAAAGACAATGATGAGCTCCTTGCATAAGATGGGATATGCTGCTAGC CGGTCACACATCGCACCGAATGCCATCAAAACAGACTGTCCAATGACAGGTTTGGTCAAGTTAGCTAAGGAACTCGTGAGCGTCGTCCCTCGGTGTTAA
AA sequence Show only first row Show all	>Lus10030535 pacid=23140537 polypeptide=Lus10030535 locus=Lus10030535.g ID=Lus10030535.BGIv1.0 annot-version=v1.0 MLSLYFVPKTLSLHFSTGSPKWGTSSSSPSNDRRFKVNCCSPERQTERGVEFETGGAFYRHESSTGRDLGVLAASIYRRSNGSLRVLDAMCGCGIRSCRY LMEAEADFVMANDANDEYRALIEGNLNRAVVDEEKKRWAVCHSEANRVLSERYLERDFFDLIDIDSFGSESAFLRSAMLTLRLGGLLYLTSTDGYTSGGH RPHHSLDAYGAFVRPLPFSNEIALRMLIGGAVREAAVLGYHVTPLFSYYAYHGPVFRVMLRLKREKLHENRDYGFIGYCNRCGHSQPFSWEELGKIGCSC RNSEVSHQPFVVSGPMWIGPLHSSDYITQMLNLAAEWGWIGNGSIDSHLEKLLNQMLDESDPRLLPGYIKLDEITKRAKINGPPLKTMMSSLHKMGYAAS RSHIAPNAIKTDCPMTGLVKLAKELVSVVPRC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56330			N2,N2-dimethylguanosine tRNA m...		Lus10030535 [exp]	0	1
AT3G20230			Ribosomal L18p/L5e family prot...		Lus10020797 [exp]	1.7	0.9257
AT2G34640		HMR, PTAC12	HEMERA, plastid transcriptiona...		Lus10038523 [exp]	4.0	0.9124
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Lus10038809 [exp]	8.7	0.9055
AT1G06190			Rho termination factor (.1.2)		Lus10022920 [exp]	10.0	0.9015
AT3G22150			Tetratricopeptide repeat (TPR)...		Lus10010473 [exp]	10.2	0.8937
AT3G06730		TRXz, TRXP ,TRX...	thioredoxin putative plastidic...		Lus10039499 [exp]	10.6	0.9019
AT2G35410			RNA-binding (RRM/RBD/RNP motif...		Lus10037265 [exp]	14.0	0.8945
AT1G02560		NCLPP5, NCLPP1,...	NUCLEAR CLPP 5, NUCLEAR-ENCODE...		Lus10002422 [exp]	20.0	0.8439
AT3G53170			Tetratricopeptide repeat (TPR)...		Lus10024893 [exp]	21.9	0.8763
AT3G12930			Lojap-related protein (.1)		Lus10002544 [exp]	22.2	0.8873

Compare expression of checked genes

Lus10030535 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.