Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56320 443 / 1e-148 PAP/OAS1 substrate-binding domain superfamily (.1) AT2G40520 376 / 8e-124 Nucleotidyltransferase family protein (.1.2.3.4) AT3G51620 372 / 3e-118 PAP/OAS1 substrate-binding domain superfamily (.1.2) AT3G61690 332 / 8e-100 nucleotidyltransferases (.1) AT5G53770 52 / 9e-07 Nucleotidyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012885 [exp] 998 / 0 AT3G51620 297 / 5e-93 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10034219 [exp] 611 / 0 AT3G56320 458 / 1e-154 PAP/OAS1 substrate-binding domain superfamily (.1) Lus10029045 [exp] 611 / 0 AT3G56320 456 / 1e-153 PAP/OAS1 substrate-binding domain superfamily (.1) Lus10022746 [exp] 357 / 9e-114 AT3G51620 659 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10025239 [exp] 356 / 2e-112 AT3G51620 689 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10006095 [exp] 353 / 2e-111 AT3G51620 686 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10030266 [exp] 337 / 4e-108 AT3G61690 640 / 0.0 nucleotidyltransferases (.1) Lus10030265 [exp] 340 / 2e-101 AT3G61690 1089 / 0.0 nucleotidyltransferases (.1) Lus10042221 [exp] 322 / 7e-101 AT3G51620 424 / 8e-138 PAP/OAS1 substrate-binding domain superfamily (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G056800 [exp] 523 / 1e-178 AT3G56320 535 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1) Potri.019G128800 [exp] 353 / 2e-111 AT3G51620 487 / 2e-160 PAP/OAS1 substrate-binding domain superfamily (.1.2) Potri.013G154900 [exp] 350 / 2e-110 AT3G51620 485 / 2e-159 PAP/OAS1 substrate-binding domain superfamily (.1.2) Potri.015G020400 [exp] 348 / 1e-105 AT3G61690 1025 / 0.0 nucleotidyltransferases (.1) Potri.012G000900 [exp] 345 / 1e-104 AT3G61690 907 / 0.0 nucleotidyltransferases (.1) Potri.002G169732 [exp] 340 / 9e-103 AT3G61690 1239 / 0.0 nucleotidyltransferases (.1) Potri.014G097600 [exp] 338 / 3e-102 AT3G61690 1198 / 0.0 nucleotidyltransferases (.1) Potri.011G116501 [exp] 63 / 1e-11 AT3G61690 82 / 6e-19 nucleotidyltransferases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0260 [flax] [poplar] NTP_transf PF01909 [flax] [poplar] NTP_transf_2 Nucleotidyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10030537 pacid=23140776 polypeptide=Lus10030537 locus=Lus10030537.g ID=Lus10030537.BGIv1.0 annot-version=v1.0 ATGGGGGATCCTAAGAGGATTTCATCCCCTGTATCCTCATCATCCTTTTCCTGCCCCAGACCTGAACAGAACCCTTTGGTTATGGACCCAGAACTCTGGT TGATGGCGGAACATAGAATCCATGAGATTTTTTGTTCTATTCAACCTGCTTTCGCATCTGAGAGGAAGAGACATGATGTTATATCATATTTAACGAGGTT GATTAAAGCACATTACACAACTGAGGTTTTTGCCTTTGGATCAGTGCCCTTCAAAACCTATCTTCCGGATGGAGATATTGATCTGACGATCCTCAGCCAC CAGCCTATGGAAAAAGAACTGGCTGAGGGTGTGCTTAATCATCTCAAAAAGCATGTGCACGACCCCAGATTCAAAGTAAAGAATGTCCAATATATAGAAG CGCAGGTTAAAGTTATAAAATGTTTGGTGAATGAGATGTCTGTGGATATATCTTTCAATCAACCGGCGGGGCTTTCTGCTCTCTGCTTTCTGGAGCAGGC TAATCAGATTTTTGGGAAAGATCATCTTCTCAAGCGGGGTATTATCTTGATAAAATCTTGGTGCTTTTACGAGAGCCGAATCCTTGGTGCAATTCATGGG CTGATCTCCACATATGCTTTGGAAATATTGGTCTTGCATATAATCAACCTTTTTCATTCATCTCTAGGAAGCCCTTTAGCAGTCCTCTATAAATTTCTGG ACTACTATAGTTCTTTCGACTGGGAGAATTGTGGTGTCAGCATAAATGGTGTAATTGTGACATCTTATCTTCCCAATATTGTGGTCAAGCCACCAGGACA GGGTGAAGATCCATCGCTGCTTGGGCCTAGCTTTCTTGGCTATTGCAATGAGACGTATGCAGTGCCAGTTAAGGCACTCGACCGTGGGAAGCAAGAATTC ATCGTTAAGCCCATGAACATAGTGGATCCTTTAAAGGAAAACAACAACTTAGGCCGGAGTGTCAGTCAAGCAAATTTCCACCGCATCAAATGCGCCCTTT CCTATGGAGCTCGGAGGCTTCGACAAATTCTTAGAGGGCCTGGAGGAAATCTTGGTAAAGGATTGGAGACATTTTTTGTCAACACTTTGGACAGGAACGG TAGAGGAGTGCGACCTGATGCAAATGTTCCCGTTCCACCTTTTGGCACTGGAAGATCCGAGGTCAGTGATCTCTTTGGTGACCATGTAACTTGGTGCCAT AGTGGTCTGCTACAAGGCCAGTGGTATCACCATTATACCCTTCCTGATCATTTCCATCAGCTTCTTTCATTACGTCCTCAAACCTTGTCGAGGGGTTCTG GAAATGTCGTCCTTCCTGGGTCTCTGCAACACAGGCAGACTGTTCTTCATCATCCAGGAACCAAGGCGTTTCTGCAACGAGGGCTGCCAAAACTTTGCCC TTGTCCTGCAGTAAAGTGTCGTAAGGACGCCCCGGAAAACCCAAGAGTTGCAGTTACAAGCATAGGCACAGGCACATTCATCCCAAATACGGTCTTTTAT GGACCAATATTCAAGGGGAAGAGCCCGGATCTGGGACAAGAGAACCGGCCAGCTGGTATGAATTTTAACTCGATAGATCTCGGACTGAAGAATTTCCCGT CACTTCTCTCTACCGGAAATCCTGCTGGTGTCGTGCTGCATTTCAACAACTGGTCTACGTTCTCCATTGGCGAATCTTCCAAGACCTCGAGTGATTCATC GTCACCAAATTCAGAGCCGACTTCATTGGTCGGTGGTAGCCAAGATGATTCTCTCATCCCATCCAGTGTGGAATCTTCCGTCACTCGGAAAGATGAGAAA ACCGCTGAGCTTGAGATAGTGGACGTCCCTGGAGAAAGGGTTGCAAAAGAAGATGACAAAGGAAAGAGTATATTGAAGAGCGAGGACTTCCCTGCTTTAA CTAAGCTGGGCTAG
AA sequence Show only first row Show all	>Lus10030537 pacid=23140776 polypeptide=Lus10030537 locus=Lus10030537.g ID=Lus10030537.BGIv1.0 annot-version=v1.0 MGDPKRISSPVSSSSFSCPRPEQNPLVMDPELWLMAEHRIHEIFCSIQPAFASERKRHDVISYLTRLIKAHYTTEVFAFGSVPFKTYLPDGDIDLTILSH QPMEKELAEGVLNHLKKHVHDPRFKVKNVQYIEAQVKVIKCLVNEMSVDISFNQPAGLSALCFLEQANQIFGKDHLLKRGIILIKSWCFYESRILGAIHG LISTYALEILVLHIINLFHSSLGSPLAVLYKFLDYYSSFDWENCGVSINGVIVTSYLPNIVVKPPGQGEDPSLLGPSFLGYCNETYAVPVKALDRGKQEF IVKPMNIVDPLKENNNLGRSVSQANFHRIKCALSYGARRLRQILRGPGGNLGKGLETFFVNTLDRNGRGVRPDANVPVPPFGTGRSEVSDLFGDHVTWCH SGLLQGQWYHHYTLPDHFHQLLSLRPQTLSRGSGNVVLPGSLQHRQTVLHHPGTKAFLQRGLPKLCPCPAVKCRKDAPENPRVAVTSIGTGTFIPNTVFY GPIFKGKSPDLGQENRPAGMNFNSIDLGLKNFPSLLSTGNPAGVVLHFNNWSTFSIGESSKTSSDSSSPNSEPTSLVGGSQDDSLIPSSVESSVTRKDEK TAELEIVDVPGERVAKEDDKGKSILKSEDFPALTKLG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56320			PAP/OAS1 substrate-binding dom...		Lus10030537 [exp]	0	1
AT1G70620			cyclin-related (.1.2.3)		Lus10000440 [exp]	3.3	0.8589
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10012885 [exp]	5.9	0.8141
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10020087 [exp]	8.4	0.8185
AT2G46060			transmembrane protein-related ...		Lus10002472 [exp]	15.5	0.8222
AT3G07550			RNI-like superfamily protein (...		Lus10041087 [exp]	16.7	0.7430
AT5G12040			Nitrilase/cyanide hydratase an...		Lus10025012 [exp]	20.5	0.8319
AT5G01230			S-adenosyl-L-methionine-depend...		Lus10021124 [exp]	21.8	0.7422
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Lus10005490 [exp]	24.8	0.7490
AT3G52120			SWAP (Suppressor-of-White-APri...		Lus10037485 [exp]	25.1	0.8132
AT1G69380		RRG	RETARDED ROOT GROWTH, Protein ...		Lus10036803 [exp]	29.2	0.7473

Compare expression of checked genes

Lus10030537 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.