Plant FIBer expression Database

Lus10030540 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G40550 637 / 0 ETG1 E2F target gene 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012889
[exp]
1075 / 0 AT2G40550 619 / 0.0 E2F target gene 1 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G056200
[exp]
761 / 0 AT2G40550 714 / 0.0 E2F target gene 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09739 MCM_bind Mini-chromosome maintenance replisome factor
Representative CDS sequence
>Lus10030540 pacid=23140660 polypeptide=Lus10030540 locus=Lus10030540.g ID=Lus10030540.BGIv1.0 annot-version=v1.0
ATGGTCGGACCGATGTACGATTGCCTAGCAAACCCTCTCGGAGCAGTCCGACTCACATTCGAAAAGGCGGTAGGTTCCGCCGGCGGCGATCCATCTGCCT
TCATCGGCAAAGACTGGGGAGCTCTCGACGTTTTCCACGAGTTTCTCTTCGTCCAAGGAAACCTCTCTCAGGTTCCGGTTCTTAATCAAGAAACTCTGAG
GTGGATTCAGCCTAATACCCTGGTTCGGTTTAGGGGGATGGTACAGGACATGTTGGGAAATGAGTTCTACGTTGGTGCTCACAAGGATGGTGCGGCCTGG
AGAACCAACAAATTCGCAGATGTGTCGCCATATCCCATTTCTACAACTGATGTAAAGATCTGGGAACGGAAATTGGTGTCCTGTGTTCCCGTCCCTGGAC
TAAGTTCATGGGCGGAGTGTGAGACTCCTGCAGCCACTTGCATGGATTTGACATCACAGCAACGAGATAAACGTCCGAGAAGTGATGCTGAACCTATGGA
TTGTGAGGCATCAGATACTGTGCTTGAAGATTCTCCTAGTGCAAAGAGGATGAGAGAGGATGGACATACTTCTCCACCTGTGCTTTCCAACCTTAAAAGT
GAAGGGCCATGTTCTAGCACAATGTTCAGGCCAGAAGTTGATGGAGATTCTTTTGCTTGTCTTGTGAAGGTGTACGATTGTCCCGAGTCTGAATTGAAGC
TGAATGATGTGTTTGAGTTTGTTGGTGTCTTCACTGCTGACTCGGATCCTGTACTATTAAACGATGATGGTGATGATGTCGACTTAACCACTAGCTTAGG
CAATGATATGATACGCAAGGTTCCGTGCCTTCACTGTATCATCCACCGGAAGCTTTCAGTTTCTGACTATATGAAGTCTTCCTCACCGATAGAGCAAAGG
ATGCATCTAGTGAAAGATACAAGGGAAGCTCTGTTAAGACATCTTACTGTGCTTTTAGGCAATGATGGCCTGGCAGCTCACTACATGTTGCTGCATCTTT
TGTCCAGGGTACACGCCCGGGTTGAGAATGCTGCGATTGGGAAGCTTTCCTTGAACCTAACATCTTTGAACAAAGAGACGCTGTCTGTATTTGGTGCTCA
GCTTAGTAATGCTCTGAAGAACCTGCTACCATTCACGGATTCCATACTCTTAACCGTGGATTATCTTAACAAGGCTTGCCTTGCTCCGAAAAAGGATTAT
AAGAAGAATCGATTGATACAAGGAACACTTCAGCTCGCCGAGGGCTCCCACTTGACAATCGACGAGACTCAATTAGAAGCTGGAACGCTCAACTCTGTCG
GAATCGAGAACGCGAGGTTGCTTAAGAATCTTACAGAGCTGCAGAAGGTGGAGTATGATTTCACATACTACAAGATGGAGATGTCAGCAGATGTTCAGCT
ACTGATACTATCAGAGGGGAAATCGAACATTTTACCGGCCGATATAATTTTGCCGGTCAGGCCTACTGATGTATGTTCCCCGGATGCTGTGAGCACTGAT
GCCATGGAAGCTTGGAGATGGTACTTGGCTACCATGAGAACAATGTCCCATATTATGGAGCCCGAGATGCAAGAGGTGGTGGAAAAGGATCTAGTAGCTG
CAAGGCAAGCCGATCGGAGCATTGGCAGTGAGGAGTTTAGCAGAATGCTGACGATGGGGAGGCTGTTGTCTTTGAGCTTTGGGGAGAAGGTGCTGACATT
AGAGAACTGGGAAATGGTGAAGGAGCTTGAGAGGTTGAGGAAGGAGAGACTTGTTGGTTGA
AA sequence
>Lus10030540 pacid=23140660 polypeptide=Lus10030540 locus=Lus10030540.g ID=Lus10030540.BGIv1.0 annot-version=v1.0
MVGPMYDCLANPLGAVRLTFEKAVGSAGGDPSAFIGKDWGALDVFHEFLFVQGNLSQVPVLNQETLRWIQPNTLVRFRGMVQDMLGNEFYVGAHKDGAAW
RTNKFADVSPYPISTTDVKIWERKLVSCVPVPGLSSWAECETPAATCMDLTSQQRDKRPRSDAEPMDCEASDTVLEDSPSAKRMREDGHTSPPVLSNLKS
EGPCSSTMFRPEVDGDSFACLVKVYDCPESELKLNDVFEFVGVFTADSDPVLLNDDGDDVDLTTSLGNDMIRKVPCLHCIIHRKLSVSDYMKSSSPIEQR
MHLVKDTREALLRHLTVLLGNDGLAAHYMLLHLLSRVHARVENAAIGKLSLNLTSLNKETLSVFGAQLSNALKNLLPFTDSILLTVDYLNKACLAPKKDY
KKNRLIQGTLQLAEGSHLTIDETQLEAGTLNSVGIENARLLKNLTELQKVEYDFTYYKMEMSADVQLLILSEGKSNILPADIILPVRPTDVCSPDAVSTD
AMEAWRWYLATMRTMSHIMEPEMQEVVEKDLVAARQADRSIGSEEFSRMLTMGRLLSLSFGEKVLTLENWEMVKELERLRKERLVG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G40550 ETG1 E2F target gene 1 (.1) Lus10030540
[exp]
0 1
AT5G56740 HAG02, HAC7, HA... histone acetyltransferase of t... Lus10012916
[exp]
2.2 0.9367
AT3G05740 RECQI1 RECQ helicase l1 (.1) Lus10026219
[exp]
4.5 0.9311
AT4G11610 NTRB, ATNTRB C2 calcium/lipid-binding plant... Lus10031816
[exp]
4.6 0.9343
AT5G27120 NOP56-like pre RNA processing ... Lus10004143
[exp]
4.7 0.9497
AT1G19880 Regulator of chromosome conden... Lus10033168
[exp]
8.5 0.9382
AT1G62500 Bifunctional inhibitor/lipid-t... Lus10004349
[exp]
8.8 0.8942
AT5G39550 ORTH1, VIM3 VARIANT IN METHYLATION 3, ORTH... Lus10039127
[exp]
8.9 0.9332
AT3G20000 TOM40 translocase of the outer mitoc... Lus10010163
[exp]
9.8 0.9383
AT5G24330 SDG34, ATXR6 SET DOMAIN PROTEIN 34, ARABIDO... Lus10016526
[exp]
9.9 0.9323
AT3G23990 HSP60-3B, HSP60 HEAT SHOCK PROTEIN 60-3B, heat... Lus10022832
[exp]
10.4 0.9379

Lus10030540 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.