Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05310 514 / 3e-179 TLC ATP/ADP transporter (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012891 [exp] 808 / 0 AT5G05310 573 / 0.0 TLC ATP/ADP transporter (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G048700 [exp] 585 / 0 AT5G05310 559 / 0.0 TLC ATP/ADP transporter (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF03219 [flax] [poplar] TLC TLC ATP/ADP transporter
Representative CDS sequence Show only first row Show all	>Lus10030543 pacid=23140626 polypeptide=Lus10030543 locus=Lus10030543.g ID=Lus10030543.BGIv1.0 annot-version=v1.0 ATGGGGAGACCTCGATTGGACGCCATTATCTCCGTCTTCGTCACCGTCCATCCTCACGAACTTCACGCTCTGATTCACTCAGCTTCCTCTTTCTTCTTCA TTTTGAGCGCTTATTTCGTGGTGTTGCCGTTGCGGGACGAAGGCGCCATTTCACTTGGACTTTCCAACCTACCTTCGTTGTTCATCGGATCATTGGCCCT TACTTTGATTGCAGCTCCTTTGTCCACTCTCATCTTCTCCTTCCCCAATTTGTCCAAAACCAAGGGTTTGGTTTTCATACACAGGTTTTTTAGTGTATCT CTTGTTGTCTTCTTCTTTCTTTGGCATTCTTCCTCAGTTGGGATTGATGGCTCTTCATCCTTGGAAGGCAAGATGGATGCAGGTGATTTGAAGAAGGATG CGAATGGAGATGGCAATGCGCATCCTGTAGTCTGGACTAAGCATGGATGGTTTTATGTTTCTGTGAGGATTGGTTTATTTCTCTGGGTGGCATTGCTGAA TCTTATTACCATCTCCTCGACTTGGGCGAGGATAATTGATGTGATGGACAGCGAGTCAGGTTCAAGATTATTTGGGTTCATCGGTGCTGGTGCAACTCTG GGACAGCTTTTTGGATCACTGTTTGCCTCTGGGATGGCTTGGTTAGGATCATTTTTACTTCTATTTGCTGCTTTCCTAATGGAACTTGCTGCACAGTCAT CGAAAGGGATTGACAAAGATTTCTCCCATCCGCCTGAAGAGTTATTTCCTCTGAGGACTGGTGATCCTAAGCAACAAAGTCACACTGACAGACAGTCATC GCCAACTTCTAGAGTGCCAACTCCAAAGTCACCTCAACCTCAGACGAAGCCTCAGCTATCTGCGATCTTAGATGGGCTCTGGCTTATATTATCATCAACT TATTTGCTATATGTGTCCCTCTTCCTATGGCTGAGTGCAGTTGTCTCGTCTTTCTTCTATTTTCAGAATATTTCTCTTGCTGACCCATCTGCTTCTATCT ACCTGCTGTGTCTCCTGCAGAAAGTGACAGTTATTGCCTTGACTATAACTACTTCTATTGGCAGAAGGAAAATGTTCGCCCAGATAAATAGTTTCATCGC CATCTTTATACTTGCTGGACAACTTACACTAACGGGACCTATCTTGACTGTGGCCGGGGTAACTATAGCTTTATGCGCTGCTCCTGCTATTGCCTTCTCC AATTTAATCGCGGTTGCTGTTTGGCCAACTTGGATGGCTGTTGCCATTTGCGAGACCTTACGGAAGGTGGTTACTTATGTAGTCACCAGGCCAGGAAGAG AACTCTTGTTCACCGTAGTTTCTCAGGACGAGAAGTACAAAGCTAAGGTCTGCATAGATGTAATCGTTCAGCGGCTTGGGGACGCCACAGCAGCAGGAAT GTACCAATTGCTATTCACCTCCCTTCACGAAAAGCCATCAATTGTTTCTCTCTATGCCCTACCTAAGGTAATTGCCAATGTCTCCCCAGGTCTGTGTGCT GTGGATACTCACTGCATTCCATCTGGGAAGACGCCAAGTCCATCTAGCAAAGCTTCAAACCGGTCAAACCAGCTGAAAACTTTTTCGAAACACACGAATT ACCCACTCTGGAAACAACCATTGGCTATTTGA
AA sequence Show only first row Show all	>Lus10030543 pacid=23140626 polypeptide=Lus10030543 locus=Lus10030543.g ID=Lus10030543.BGIv1.0 annot-version=v1.0 MGRPRLDAIISVFVTVHPHELHALIHSASSFFFILSAYFVVLPLRDEGAISLGLSNLPSLFIGSLALTLIAAPLSTLIFSFPNLSKTKGLVFIHRFFSVS LVVFFFLWHSSSVGIDGSSSLEGKMDAGDLKKDANGDGNAHPVVWTKHGWFYVSVRIGLFLWVALLNLITISSTWARIIDVMDSESGSRLFGFIGAGATL GQLFGSLFASGMAWLGSFLLLFAAFLMELAAQSSKGIDKDFSHPPEELFPLRTGDPKQQSHTDRQSSPTSRVPTPKSPQPQTKPQLSAILDGLWLILSST YLLYVSLFLWLSAVVSSFFYFQNISLADPSASIYLLCLLQKVTVIALTITTSIGRRKMFAQINSFIAIFILAGQLTLTGPILTVAGVTIALCAAPAIAFS NLIAVAVWPTWMAVAICETLRKVVTYVVTRPGRELLFTVVSQDEKYKAKVCIDVIVQRLGDATAAGMYQLLFTSLHEKPSIVSLYALPKVIANVSPGLCA VDTHCIPSGKTPSPSSKASNRSNQLKTFSKHTNYPLWKQPLAI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05310			TLC ATP/ADP transporter (.1.2....		Lus10030543 [exp]	0	1
AT4G14145			unknown protein		Lus10023526 [exp]	1.0	0.8813
AT1G28210		ATJ1	DNAJ heat shock family protein...		Lus10020949 [exp]	8.7	0.8107
AT3G24560		RSY3	RASPBERRY 3, Adenine nucleotid...		Lus10034921 [exp]	11.9	0.8594
AT4G12740			HhH-GPD base excision DNA repa...		Lus10043074 [exp]	15.2	0.8531
AT3G27530		MAG4, GC6	MAIGO 4, golgin candidate 6 (....		Lus10032089 [exp]	16.2	0.8695
AT1G25520			Uncharacterized protein family...		Lus10035040 [exp]	18.3	0.8187
AT4G00830		LIF2	LHP1-Interacting Factor 2, RNA...		Lus10002689 [exp]	26.0	0.8531
AT5G05310			TLC ATP/ADP transporter (.1.2....		Lus10012891 [exp]	27.7	0.8249
AT1G30825		DIS2, ARPC2, AR...	DISTORTED TRICHOMES 2, ACTIN-R...		Lus10008071 [exp]	29.2	0.7862
AT2G35035		URED	urease accessory protein D (.1...		Lus10007861 [exp]	32.5	0.7904

Compare expression of checked genes

Lus10030543 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.