Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40490 618 / 0 HEME2 Uroporphyrinogen decarboxylase (.1) AT3G14930 409 / 4e-141 HEME1 Uroporphyrinogen decarboxylase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012892 [exp] 769 / 0 AT2G40490 621 / 0.0 Uroporphyrinogen decarboxylase (.1) Lus10043079 [exp] 396 / 2e-135 AT3G14930 608 / 0.0 Uroporphyrinogen decarboxylase (.1.2.3) Lus10011170 [exp] 394 / 2e-135 AT3G14930 608 / 0.0 Uroporphyrinogen decarboxylase (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G048900 [exp] 680 / 0 AT2G40490 633 / 0.0 Uroporphyrinogen decarboxylase (.1) Potri.001G390800 [exp] 393 / 4e-135 AT3G14930 627 / 0.0 Uroporphyrinogen decarboxylase (.1.2.3) Potri.013G083200 [exp] 372 / 7e-130 AT2G40490 319 / 3e-109 Uroporphyrinogen decarboxylase (.1) Potri.011G109800 [exp] 227 / 4e-72 AT3G14930 386 / 2e-134 Uroporphyrinogen decarboxylase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0160 [flax] [poplar] Methionine_synt PF01208 [flax] [poplar] URO-D Uroporphyrinogen decarboxylase (URO-D)
Representative CDS sequence Show only first row Show all	>Lus10030544 pacid=23140536 polypeptide=Lus10030544 locus=Lus10030544.g ID=Lus10030544.BGIv1.0 annot-version=v1.0 ATGTCTGCCATTGTCTCTGGAGGAGGAGTAGGAGGAGCAGTTAGCTCAATTAGCTCTTCGTTCTCCGCTCCGACGAGAATCTCCCCGTTTGCTTCTCCTA AGCATCCTTCCGTCGTGCGCTGTGCGCTTCAAGGAACGGTCGCCGAACCACAAGCTGCATCTCTTACTGAACCCCTTCTGCTTAATGCTGTTAAAGGACT TGATGTTGAGAGGCCCCCAGTTTGGCTTATGCGGCAGGCTGGGCGGTACATGAAGGCAGTTTTTCTGTCGTTCTTTGAGCAGAGTTACCAAACTCTATGC GAAAAGCATCCTTCATTTCGTGAAAGATCGGAAAATGTTGATCTTGTAGTTGAAATCTCACTACAACCGTGGAAAGTTTTTCAACCTGATGGGGTTATCT TATTTTCTGATATCTTGACCCCACTTTCCGGAATGAACATACCTTTCGACATTGTGAAAGGCAAGGGTCCTGTCATCTTCGATCCTTTGCGTACATTAGA CGATGTTGATCAAGTGAGAGAGTTTGTTCCTGAAGAGTTTGTTCCATATGTTGGGGAAGCATTGACAATCTTGCGAAAAGAGGTTGATAACAAAGCTGCA GTGCTGGGTTTCGTTGGAGCTCCTTTCACACTTGCATCGTACGTTGTTGAAGGCGGTTCATCAAAGCATTTCACCAAGATAAAAAGATTGGCCTTCTCAC AACCGAAGGTTCTACACGCGCTGCTTCAGAAGTTCGCGACATCCATGGCGAAGTACGTCCAATACCAAGCCGACCACGGAGCTCAAGCCGTCCAAATCTT CGACTCATGGGCCACAGAACTGAGTCCAGTCGATTTCGAGGAATTCAGCCTCCCTTACTTGAAACAGATAGTCGACACGGTAAAGCAAACCCACCCGAAC CTCCCACTAATCCTCTACGCGAGCGGATCTGGCGGGTTGCTCGAGAGGCTGGCATTGACCGGTGTGGATGTTGTTAGCTTGGACTGGACGGTGGACATGG CGGAAGGCAGGAGGCGGCTGGGAGCGGACATAGCAGTCCAGGGGAACGTCGATCCGGGTGTACTTTTCGGGTCGAAACAGTTCATCACCGACCGGATCAA CGACGTTGTGCAGAAGGCCGGTAAGGGGAAACATATATTGAACCTTGGACATGGGATTGTTGTAGGGACTCCAGAGGAGAACGTTGCTCATTTTTTTGAG GTCGCCAAAGGGCTTAGATACTGA
AA sequence Show only first row Show all	>Lus10030544 pacid=23140536 polypeptide=Lus10030544 locus=Lus10030544.g ID=Lus10030544.BGIv1.0 annot-version=v1.0 MSAIVSGGGVGGAVSSISSSFSAPTRISPFASPKHPSVVRCALQGTVAEPQAASLTEPLLLNAVKGLDVERPPVWLMRQAGRYMKAVFLSFFEQSYQTLC EKHPSFRERSENVDLVVEISLQPWKVFQPDGVILFSDILTPLSGMNIPFDIVKGKGPVIFDPLRTLDDVDQVREFVPEEFVPYVGEALTILRKEVDNKAA VLGFVGAPFTLASYVVEGGSSKHFTKIKRLAFSQPKVLHALLQKFATSMAKYVQYQADHGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPN LPLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGADIAVQGNVDPGVLFGSKQFITDRINDVVQKAGKGKHILNLGHGIVVGTPEENVAHFFE VAKGLRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40490		HEME2	Uroporphyrinogen decarboxylase...		Lus10030544 [exp]	0	1
AT2G40490		HEME2	Uroporphyrinogen decarboxylase...		Lus10012892 [exp]	2.4	0.9318
AT3G27160		GHS1	GLUCOSE HYPERSENSITIVE 1, Ribo...		Lus10041564 [exp]	6.2	0.9196
AT3G44890		RP19, RPL9	ribosomal protein L9 (.1)		Lus10037372 [exp]	6.6	0.9443
AT3G09210		PTAC13	plastid transcriptionally acti...		Lus10027750 [exp]	8.1	0.9125
AT5G14320		EMB3137	EMBRYO DEFECTIVE 3137, Ribosom...		Lus10025642 [exp]	10.7	0.9424
AT1G05190		EMB2394	embryo defective 2394, Ribosom...		Lus10013041 [exp]	13.0	0.9358
AT3G26060		ATPRXQ ,ATPRX Q	peroxiredoxin Q, Thioredoxin s...		Lus10033424 [exp]	15.6	0.9247
AT4G02725			unknown protein		Lus10006915 [exp]	16.6	0.9337
AT5G65220			Ribosomal L29 family protein ...		Lus10000745 [exp]	17.0	0.9344
AT2G06520		PSBX	photosystem II subunit X (.1)		Lus10026458 [exp]	20.0	0.9129

Compare expression of checked genes

Lus10030544 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.