Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58380 248 / 2e-79 PKS2, CIPK10, SnRK3.8, SIP1 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) AT5G07070 236 / 4e-75 CIPK2, SnRK3.2 SNF1-RELATED PROTEIN KINASE 3.2, CBL-interacting protein kinase 2 (.1) AT5G45820 224 / 1e-70 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT5G01810 216 / 8e-68 ATPK10, SnRK3.1, SIP2, PKS3, CIPK15 SNF1-RELATED PROTEIN KINASE 3.1, SOS3-INTERACTING PROTEIN 2, PROTEIN KINASE 10, CBL-interacting protein kinase 15 (.1.2.3) AT1G30270 201 / 3e-61 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT4G18700 197 / 1e-59 ATWL4, CIPK12, SnRK3.9 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) AT5G45810 194 / 9e-59 CIPK19, SnRK3.5 SNF1-RELATED PROTEIN KINASE 3.5, CBL-interacting protein kinase 19 (.1) AT5G25110 194 / 1e-58 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) AT1G01140 192 / 2e-58 PKS6, CIPK9, SnRK3.12 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) AT2G30360 187 / 1e-56 PKS5, CIPK11, SnRK3.22, SIP4 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012893 [exp] 521 / 0 AT5G58380 446 / 3e-154 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10029054 [exp] 308 / 1e-103 AT5G58380 483 / 4e-169 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10034212 [exp] 308 / 2e-103 AT5G45820 473 / 5e-166 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Lus10022749 [exp] 247 / 2e-79 AT5G58380 598 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10014163 [exp] 236 / 3e-75 AT5G58380 592 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10008582 [exp] 234 / 4e-75 AT5G58380 570 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10042229 [exp] 229 / 3e-72 AT5G58380 676 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10007283 [exp] 224 / 2e-70 AT5G45820 578 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Lus10021852 [exp] 207 / 6e-64 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G048800 [exp] 276 / 4e-91 AT5G58380 539 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.016G133500 [exp] 259 / 5e-84 AT5G58380 593 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.013G156000 [exp] 240 / 9e-77 AT5G58380 623 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.019G127500 [exp] 235 / 1e-74 AT5G58380 641 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.011G067500 [exp] 233 / 8e-74 AT5G45820 647 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Potri.006G186200 [exp] 216 / 1e-67 AT4G30960 649 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.006G062800 [exp] 206 / 2e-63 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.018G108500 [exp] 205 / 2e-63 AT4G30960 639 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.018G119200 [exp] 202 / 6e-62 AT1G30270 749 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.013G155600 [exp] 195 / 8e-60 AT2G30360 536 / 0.0 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0573 [flax] [poplar] KA1-like PF03822 [flax] [poplar] NAF NAF domain
Representative CDS sequence Show only first row Show all	>Lus10030546 pacid=23140786 polypeptide=Lus10030546 locus=Lus10030546.g ID=Lus10030546.BGIv1.0 annot-version=v1.0 ATGATGTTGCGTACAATGTGTGGGACGCCTGCCTATGTGGCGCCAGAGGTTGTGACCAGACGAGGCTACGATGGCTCGAAGTCCGATGTGTGGTCTTGTG GGGTGATCTTGTATGTGATGCTAGCTGGCTATTTACCGTTTCACGACGAAAATATCATTGCCTTGTACAGGAAGGCAAGCAATGGTGACTACAAGTTTCC TGCTTGGTTCTCACCCGAGGTGTGCAGGCTAGTGTCGAGAATGCTGGATCCGAATGCAGCTACTCGGATCAGCATATCAGAGATAACGAATGATCCTTGG TTCAGAAAAGGGTTGGATGATCATGATCATGACAATGATATAACCAACTCTGTTACTACTACTACTACTACTGCTGCTACCACTGAAGAACAAGAAGGGG ACAGAATCCTTAAACCGACAAACTTGAATGCATTTGATATAATCTCATTTTCGAGTGGACTTGACTTGTCTGGTATGTTTGCTCAAGATTATCTGAAGAA CGTGAACTACAAACAAACGATGAAATTTGTGTCGATGAAGTCTGGATCGGAGATTGTGTCGAAGCTGGAGGGGATTGCTGCGAGTCGAAGGTTACGAATT AAGAAGAGGGACAGAGGGATGTTAGTGCTTGAGGAGGCAATGGATGTTGAAGGAGGTGTGATAAGGGGTTTATGTGTTGATGCTGAGGTGTTTGAGTTCA CTCCTTTCTGTCATCTGGTGGAGCTGAGATTGTCTGGTGATGGTGATTCGGTGGAACGGTGGCGGATTGCGGAGCGTAGCTGGTTGAGAGATGATCTTAA GGATATTGTTTGGTCGTGGATTGACGGGTCATGA
AA sequence Show only first row Show all	>Lus10030546 pacid=23140786 polypeptide=Lus10030546 locus=Lus10030546.g ID=Lus10030546.BGIv1.0 annot-version=v1.0 MMLRTMCGTPAYVAPEVVTRRGYDGSKSDVWSCGVILYVMLAGYLPFHDENIIALYRKASNGDYKFPAWFSPEVCRLVSRMLDPNAATRISISEITNDPW FRKGLDDHDHDNDITNSVTTTTTTAATTEEQEGDRILKPTNLNAFDIISFSSGLDLSGMFAQDYLKNVNYKQTMKFVSMKSGSEIVSKLEGIAASRRLRI KKRDRGMLVLEEAMDVEGGVIRGLCVDAEVFEFTPFCHLVELRLSGDGDSVERWRIAERSWLRDDLKDIVWSWIDGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10030546 [exp]	0	1
					Lus10021851 [exp]	2.0	0.9932
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10004530 [exp]	2.8	0.9932
					Lus10008791 [exp]	3.5	0.9932
					Lus10012440 [exp]	4.0	0.9932
					Lus10031183 [exp]	5.5	0.9853
AT1G16760			Protein kinase protein with ad...		Lus10033340 [exp]	5.8	0.9462
					Lus10016844 [exp]	6.1	0.8244
					Lus10026713 [exp]	6.5	0.9847
					Lus10020451 [exp]	6.5	0.9847
AT5G02920			F-box/RNI-like superfamily pro...		Lus10035325 [exp]	8.0	0.9774

Compare expression of checked genes

Lus10030546 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.