Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06470 287 / 2e-97 GNS1/SUR4 membrane protein family (.1) AT3G06460 250 / 1e-82 GNS1/SUR4 membrane protein family (.1) AT1G75000 97 / 2e-23 GNS1/SUR4 membrane protein family (.1) AT4G36830 82 / 5e-18 HOS3-1 GNS1/SUR4 membrane protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012894 [exp] 338 / 9e-118 AT3G06470 298 / 5e-102 GNS1/SUR4 membrane protein family (.1) Lus10020825 [exp] 206 / 5e-64 AT3G06460 260 / 5e-85 GNS1/SUR4 membrane protein family (.1) Lus10012685 [exp] 205 / 1e-63 AT3G06470 259 / 3e-84 GNS1/SUR4 membrane protein family (.1) Lus10022493 [exp] 98 / 1e-23 AT4G36830 374 / 7e-131 GNS1/SUR4 membrane protein family (.1) Lus10020972 [exp] 81 / 3e-19 AT3G06470 100 / 2e-27 GNS1/SUR4 membrane protein family (.1) Lus10016797 [exp] 81 / 7e-18 AT4G36830 296 / 2e-101 GNS1/SUR4 membrane protein family (.1) Lus10018796 [exp] 48 / 9e-07 AT4G36830 172 / 7e-54 GNS1/SUR4 membrane protein family (.1) Lus10018795 [exp] 42 / 9e-05 AT4G36830 157 / 1e-48 GNS1/SUR4 membrane protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G019700 [exp] 327 / 2e-113 AT3G06470 315 / 2e-108 GNS1/SUR4 membrane protein family (.1) Potri.003G019800 [exp] 265 / 1e-88 AT3G06470 280 / 2e-94 GNS1/SUR4 membrane protein family (.1) Potri.007G031500 [exp] 97 / 1e-23 AT4G36830 368 / 6e-129 GNS1/SUR4 membrane protein family (.1) Potri.014G040500 [exp] 94 / 2e-22 AT4G36830 323 / 5e-111 GNS1/SUR4 membrane protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01151 [flax] [poplar] ELO GNS1/SUR4 family
Representative CDS sequence Show only first row Show all	>Lus10030547 pacid=23140720 polypeptide=Lus10030547 locus=Lus10030547.g ID=Lus10030547.BGIv1.0 annot-version=v1.0 ATGGCGCCGTCACAAATCCTCTCCACTCTCAACTACTGGCTAGTCACCCACCCTAAAATCCTCTACTTCACTTGGTCCCCAGGCGAAACCTTCGCTTCAA CTCCCCAATTCCTCGCCGCCGCCGTAATCTCCTACCTTATCCTCACCCTCCTCCTCCGCCGCCTCCCATTCCCTCCGCTCCCACCTTCGCTCCTCAAACC CCTCACCGCCGCCCACAGCCTCGTCCTCTTCCTCCTCTCCGCCTTCATGTCCGCCGGCTGCCTCCTCTCAATCTTCTCCTCCGGCAGCAGCATCCGCCAC GCCGTCTGCTTCCCTCCGGGCACCCCCCGATCCGGCCCGCTCTTCTTCTGGGCCAACGTCTTCTACCTCTCCAAATACCTAGAATTCGGGGACACGCTCC TGATACTCCTCAGCAAGTCCGATCAACGGCTGACGTTCCTCCACGTGTACCACCACGCCACCGTCGTCGTAATGTGCTACCTCTGGCTCGCCACCGCGCA GTCTCTGTTCCCAGTGGCGCTCGTGACCAACGCCACCGTCCACATCGTCATGTACTACTACTACTTCAGATCGGCCGTCGGGTCCCGCCCTCGGTGGAAG AGGCTCGTCACTGATTTCCAGATCGTGCAGTTCGTCTTCAGCTTTGGAATCTCTGGTTTGATGCTGTACTACCACTTCGGCGGCGGAGGTTGCTCCGGAA TGGCTGGTTGGTGCTTCAATGCCGTTTTCAATGCTTCGCTTTTGGCCCTTTTTGTTGATTTCCATGGGAAGAGCTACAAGAAGAGGAAGGAAATGGAGAA GGAGAAGATTGCTTCCAAGAGCAAATAA
AA sequence Show only first row Show all	>Lus10030547 pacid=23140720 polypeptide=Lus10030547 locus=Lus10030547.g ID=Lus10030547.BGIv1.0 annot-version=v1.0 MAPSQILSTLNYWLVTHPKILYFTWSPGETFASTPQFLAAAVISYLILTLLLRRLPFPPLPPSLLKPLTAAHSLVLFLLSAFMSAGCLLSIFSSGSSIRH AVCFPPGTPRSGPLFFWANVFYLSKYLEFGDTLLILLSKSDQRLTFLHVYHHATVVVMCYLWLATAQSLFPVALVTNATVHIVMYYYYFRSAVGSRPRWK RLVTDFQIVQFVFSFGISGLMLYYHFGGGGCSGMAGWCFNAVFNASLLALFVDFHGKSYKKRKEMEKEKIASKSK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06470			GNS1/SUR4 membrane protein fam...		Lus10030547 [exp]	0	1
AT5G01410		PDX1, ATPDX1.3,...	REDUCED SUGAR RESPONSE 4, ARAB...		Lus10038318 [exp]	1.4	0.9322
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10007533 [exp]	3.5	0.9198
AT5G42130		AtMfl1	MitoFerrinLike1, Mitochondrial...		Lus10029770 [exp]	6.7	0.9068
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10009842 [exp]	6.9	0.9110
AT2G21170		PDTPI, TIM	PLASTID ISOFORM TRIOSE PHOSPHA...		Lus10012171 [exp]	8.5	0.8625
AT2G20690			lumazine-binding family protei...		Lus10021323 [exp]	8.6	0.8455
AT1G61790			Oligosaccharyltransferase comp...		Lus10007647 [exp]	10.4	0.9076
AT2G18840			Integral membrane Yip1 family ...		Lus10006966 [exp]	10.9	0.9018
AT3G61550			RING/U-box superfamily protein...		Lus10041079 [exp]	11.5	0.8632
AT2G18840			Integral membrane Yip1 family ...		Lus10025478 [exp]	11.7	0.9023

Compare expression of checked genes

Lus10030547 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.