Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02750 468 / 2e-154 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09410 435 / 1e-142 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G53600 421 / 3e-137 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G56690 395 / 3e-127 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62260 388 / 3e-125 MEF9 mitochondrial editing factor 9 (.1) AT2G35030 387 / 6e-125 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 385 / 2e-123 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G32415 372 / 8e-118 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G16835 366 / 1e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16860 337 / 8e-104 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012897 [exp] 748 / 0 AT4G02750 469 / 4e-156 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013540 [exp] 435 / 9e-142 AT4G02750 1075 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013149 [exp] 406 / 2e-131 AT1G56690 946 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012514 [exp] 402 / 2e-131 AT1G62260 689 / 0.0 mitochondrial editing factor 9 (.1) Lus10015898 [exp] 361 / 9e-114 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032091 [exp] 359 / 1e-112 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003857 [exp] 355 / 2e-112 AT4G02750 404 / 4e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009269 [exp] 350 / 9e-111 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031994 [exp] 353 / 4e-110 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G019900 [exp] 899 / 0 AT4G02750 542 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G005400 [exp] 464 / 9e-154 AT1G56690 1018 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G048800 [exp] 461 / 5e-152 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G139200 [exp] 439 / 1e-144 AT1G62260 749 / 0.0 mitochondrial editing factor 9 (.1) Potri.005G006400 [exp] 434 / 2e-142 AT1G56690 993 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G087300 [exp] 415 / 2e-134 AT1G32415 851 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.016G038400 [exp] 389 / 5e-126 AT2G35030 701 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G111300 [exp] 380 / 2e-119 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G121400 [exp] 354 / 1e-113 AT1G13410 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G058900 [exp] 368 / 2e-113 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10030549 pacid=23140603 polypeptide=Lus10030549 locus=Lus10030549.g ID=Lus10030549.BGIv1.0 annot-version=v1.0 ATGAAAGAAAGGCTGCTCAACTTCGGCGGGAAAGCAAGCTATGTATATAACCAGAACCTCAAGATCACCCATTACGGCAAAACCGGCCGAATCAACGACG CAGTCAGAGTATTCTCTCAGATTCACCGGAAGAACACCGTCACTTACAATTCCATGATATCCGCCTACGCGAAGAACGGCAGATTAAACCACGCACGCCA GGTGTTTGATCAAATGCCTCGCAGAAACACGGTGTCGTGGAACTCTATGCTCTCTGCCTACTTGCACAATGGAGAAGTTGAGAAAGCCTCTAAGCTGTTC GGCGAAATGCCTCAAAGGGACCTCTTCTCGTTCACTTTGATGATCACTGTCTACACCCGGAATGGGGAGCTTGACAAGGGTAGGAACGTGCTCAACTTGT TGGGTTCTGATGATAGGAAAGACCCTTCTTGTTGGAACGCATTGATTGCAGGTTATGCGAAGAAGAGGAGGTTTGACGAGGCTAAGAGTTTGCTTGATGA GATGCCTGTTAAGAATTCGGTCTCGTGGAACTCGATGCTTGCTGGGTATACCAAGAACGGAGAAATGGAATTAGGGAAGCGGTTTTTCGATGGAATGGAA GAGCGCAATGAGGTTTCGTATAATTTGATGGTGGATGGGTATGTTGAAGTAGGTGATTTGGATTCTGCTTGGAAGTTGTTTCAAGAAATTCCTGTGCCTA ATGTTGTTTCTTGTGTGACTATGATAACTGGATTTGCACGAAGTGGCAAGGTTTCGGAAGCTAGGAGATTGTTCGATCAGATTCCTAGCAGAAATTTGTT TACTTTCAATGCTATGCTTTCAGCTTATACTCAGAACGGATGCTTCGAAGAGGCTGAGAAGCTATTTGGAGATATGGCGGAAAAGGATTCTGTGTCCTGG ACTATCATGATCAATGGATATGGCCATGTTGGTAAGCTTGGTAAGGCAAGGGAGTTGCTGAAGAGAATGCCTTTCCGGAACGTTGCAGCCCAAACCGCAA TGATCAATGCTTATGTACAGAACAACGAGATCGACAAAGCCGGTGAAATCTTCAGTTCTATGAGAAATAATGCTGATGTAATCTGTTGCAATACTATGAT CTCCGGCTATGCTCAGCACCAAAGAATGGGTGAAGCTTTTCATTTATTCAAGAAAATGGCTAACAAGGACACGGTTACGTGGAACACCATGATTAGAGGC TATGCTCAAGCGGGGATGATGGATCGAGCTTGGGAGATATTTAACGATATGGGGATGAAGAACACGAATTTAGTCTCGTGGAATTCGTTAATCAGCGGAT ACACACAGAACGATATGCATTTCGAAGCGTTGAAAAGCTTCTCGTTGATGGTGAAACAAGGAATATGGAAACCGGATCAGTCAACTTTCGCTTCAGGGCT AAGTGCTTGTGCCGGAATCGCTGCTTTACAACTGGGGAGACAACTTCACCAGCTTGTGGAGAAAAGTGGATTCACTAATGATTTGTTTGTTAGTAATGGC TTGATCACCGTTTATTCGAAATGCGGAAGGATTTTCGAAGCCGAGCTTGTTTTCCGAGGTATTTCTAATCCTGATGTGGTATCTTGGAATTCTTTAATCA GCGGCTACGCGTTGAATGGCTACGGAAATAAGGCTCTCGAACTATTTACCACGATGAAGTTGAAAGGTGTGGTTCCTGATTCGATCACGTTCACCGGAAT TTTGTCAGCATGTGTTCATAATGGGATGGTTGACGTGGGGTTGAAGTTATTCAACAGCATGACAGACGTGTACTCTGTAAAACCATTGCCGGAACACTAT GGTTGCCTGATCGATTTGGTTGCGCGAGTAGGGCAGTTGGACGTGGCTTTCAAGTTGATAAACGAAGCAAACAATGAACCGAAGAATGCAGCAGTATGGG GTGCACTGCTCAGTGCCTGCAGGACACACCGGAATCACGAGATTGGGAAGGTAGCTTCGGAGAAGTTGGCGGAACTAGAACCTCCTAAAACGTCCAGTAA TTATGTCCTTTTGTCGAGCATTCATGCCGACACAGGAAGATGGGACGAGGTGCGGGAAGTTAGGGAGTTGATGAAAGAAAAACAACCGGGATGCAGCTGG ATTGAAATCGGAAACCAGGTCGAAGCTTTCAAATCGGCATCGTCGAACCAGCCGAGAGTAGCGGATGTTAGTGATGTTCTAAAATCCTTGGCTGCTGAGA TGAGAAGCACATCTCATACGTCAGAATCCGTGACCTTGCCAGCTTAA
AA sequence Show only first row Show all	>Lus10030549 pacid=23140603 polypeptide=Lus10030549 locus=Lus10030549.g ID=Lus10030549.BGIv1.0 annot-version=v1.0 MKERLLNFGGKASYVYNQNLKITHYGKTGRINDAVRVFSQIHRKNTVTYNSMISAYAKNGRLNHARQVFDQMPRRNTVSWNSMLSAYLHNGEVEKASKLF GEMPQRDLFSFTLMITVYTRNGELDKGRNVLNLLGSDDRKDPSCWNALIAGYAKKRRFDEAKSLLDEMPVKNSVSWNSMLAGYTKNGEMELGKRFFDGME ERNEVSYNLMVDGYVEVGDLDSAWKLFQEIPVPNVVSCVTMITGFARSGKVSEARRLFDQIPSRNLFTFNAMLSAYTQNGCFEEAEKLFGDMAEKDSVSW TIMINGYGHVGKLGKARELLKRMPFRNVAAQTAMINAYVQNNEIDKAGEIFSSMRNNADVICCNTMISGYAQHQRMGEAFHLFKKMANKDTVTWNTMIRG YAQAGMMDRAWEIFNDMGMKNTNLVSWNSLISGYTQNDMHFEALKSFSLMVKQGIWKPDQSTFASGLSACAGIAALQLGRQLHQLVEKSGFTNDLFVSNG LITVYSKCGRIFEAELVFRGISNPDVVSWNSLISGYALNGYGNKALELFTTMKLKGVVPDSITFTGILSACVHNGMVDVGLKLFNSMTDVYSVKPLPEHY GCLIDLVARVGQLDVAFKLINEANNEPKNAAVWGALLSACRTHRNHEIGKVASEKLAELEPPKTSSNYVLLSSIHADTGRWDEVREVRELMKEKQPGCSW IEIGNQVEAFKSASSNQPRVADVSDVLKSLAAEMRSTSHTSESVTLPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10030549 [exp]	0	1
AT5G04780			Pentatricopeptide repeat (PPR)...		Lus10034715 [exp]	2.8	0.8500
AT2G27610			Tetratricopeptide repeat (TPR)...		Lus10004892 [exp]	3.5	0.8280
AT4G14050			Pentatricopeptide repeat (PPR)...		Lus10040634 [exp]	3.5	0.8431
AT2G40720			Tetratricopeptide repeat (TPR)...		Lus10027366 [exp]	3.6	0.8642
AT3G15130			Tetratricopeptide repeat (TPR)...		Lus10007683 [exp]	5.0	0.7939
AT3G15130			Tetratricopeptide repeat (TPR)...		Lus10030124 [exp]	5.5	0.8298
AT5G15280			Pentatricopeptide repeat (PPR)...		Lus10033008 [exp]	6.3	0.8403
AT1G05670			Pentatricopeptide repeat (PPR-...		Lus10013283 [exp]	6.7	0.8301
AT3G25970			Pentatricopeptide repeat (PPR)...		Lus10030249 [exp]	8.0	0.8311
AT1G64310			Tetratricopeptide repeat (TPR)...		Lus10028074 [exp]	8.8	0.8329

Compare expression of checked genes

Lus10030549 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.