Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01790 44 / 3e-05 unknown protein AT2G40475 42 / 0.0001 ASG8 ALTERED SEED GERMINATION 8, unknown protein AT1G06930 40 / 0.0003 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012896 [exp] 228 / 2e-75 AT2G40475 52 / 6e-08 ALTERED SEED GERMINATION 8, unknown protein Lus10034209 [exp] 67 / 9e-14 AT1G06930 52 / 8e-09 unknown protein Lus10029060 [exp] 66 / 3e-13 AT5G01790 46 / 2e-06 unknown protein Lus10025251 [exp] 61 / 6e-11 AT1G06930 47 / 8e-07 unknown protein Lus10009096 [exp] 60 / 1e-10 AT1G06930 47 / 2e-06 unknown protein Lus10009929 [exp] 40 / 0.0006 AT1G06930 61 / 1e-11 unknown protein Lus10014158 [exp] 40 / 0.0008 AT1G06930 45 / 8e-06 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G107200 [exp] 66 / 3e-13 AT2G40475 49 / 4e-07 ALTERED SEED GERMINATION 8, unknown protein Potri.016G133200 [exp] 64 / 4e-12 AT2G40475 50 / 1e-07 ALTERED SEED GERMINATION 8, unknown protein Potri.013G083101 [exp] 56 / 3e-09 AT2G40475 60 / 3e-11 ALTERED SEED GERMINATION 8, unknown protein Potri.013G156100 [exp] 52 / 6e-08 AT1G06930 / unknown protein Potri.019G127400 [exp] 49 / 4e-07 AT1G06930 / unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05097 [flax] [poplar] DUF688 Protein of unknown function (DUF688)
Representative CDS sequence Show only first row Show all	>Lus10030550 pacid=23140574 polypeptide=Lus10030550 locus=Lus10030550.g ID=Lus10030550.BGIv1.0 annot-version=v1.0 ATGCTGAGTGCAAAACTCACTACCACCACCTCCTCCCGCCGCCGAAACGAGCAGCCGGCCACCAAACTCCCACAACCGCCGCCGCAAATAGACTCCAAGA GGAGGATAATGTCGAAAGACATAAACACCCCTAACCCTTCCTTCAGAGTCTACTACGGCGGCGCCTCCGTCGCTGTCCCTTTCACCTGGGAGACCGCTCC AGGGACTCCAAAGCACCACTCCTCGGAATCTGAATCTAGTCATCATCAGATTCCTCTATCTCCGCCGCCTTCTTTCTACTCCGCCGCCTCCATTCATTCC GCCACTTCTTCTTCTCGTAGCTCCTTCTCTTCCAAGAGGTTGTTGTTCCTCCCTCTCGTCAGAGCTCTGTCCGGCCTCCGCACTTCGTCGTCTCGTAGCT TCTCCTCCGCCTCCTCGGCGACGGCGGCCTCTTTCTCGCCGGGAAGATCCGGCGGGTTGGATCGGGGCCGCCGGAGGAGGAGGAGCAGGTGTTTCTCTTG CTCCAGATTGCCTGTTGTCCACCACGGGGATGTGAACGATGATGATGTCGACGAGGATGAGGAGTTCCAATCGGAAGGGCGTAAAGGTAATTACGATGAT GTTGGAGGTGGGACTGAGATTACACTGAAGCGTAGGTCGTTGTCGATGGGAGGAGGAGGATGGGATTCGATCGGACGGATGAGGAATGTCTTGTTTGGAT GCGGCAGCGGCCGTAGCTAG
AA sequence Show only first row Show all	>Lus10030550 pacid=23140574 polypeptide=Lus10030550 locus=Lus10030550.g ID=Lus10030550.BGIv1.0 annot-version=v1.0 MLSAKLTTTTSSRRRNEQPATKLPQPPPQIDSKRRIMSKDINTPNPSFRVYYGGASVAVPFTWETAPGTPKHHSSESESSHHQIPLSPPPSFYSAASIHS ATSSSRSSFSSKRLLFLPLVRALSGLRTSSSRSFSSASSATAASFSPGRSGGLDRGRRRRRSRCFSCSRLPVVHHGDVNDDDVDEDEEFQSEGRKGNYDD VGGGTEITLKRRSLSMGGGGWDSIGRMRNVLFGCGSGRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01790			unknown protein		Lus10030550 [exp]	0	1
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Lus10002089 [exp]	1.0	0.9208
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10037640 [exp]	3.7	0.8816
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Lus10003854 [exp]	3.9	0.8586
AT1G12330			unknown protein		Lus10004335 [exp]	6.2	0.7964
AT3G59420		ACR4	crinkly4 (.1)		Lus10000764 [exp]	7.7	0.8376
AT5G57670			Protein kinase superfamily pro...		Lus10019990 [exp]	8.9	0.8315
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10002501 [exp]	11.7	0.8326
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Lus10000143 [exp]	12.4	0.8371
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10015623 [exp]	13.9	0.8105
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Lus10041362 [exp]	15.3	0.8315

Compare expression of checked genes

Lus10030550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.