Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56250 55 / 2e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G055900 [exp] 62 / 2e-11 AT3G56250 53 / 1e-08 unknown protein Potri.013G083700 [exp] 59 / 3e-10 AT3G56250 59 / 2e-10 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030552 pacid=23140643 polypeptide=Lus10030552 locus=Lus10030552.g ID=Lus10030552.BGIv1.0 annot-version=v1.0 ATGGAATCTCAACATGATGGAACTAGAAGTAGCATCGGCGGTAAACGGAAGCTGCCGCTCTCCGATTGCACAAACACCGTCCACATCCGTTCCTCCACCA CTTCCTCTTCTTCCTCCTCTTCATGTTCCGTTCTCAAAAAGCCCTTTCCCGTCTCCTTCCAGTTTCTCGATTCGCAACGGCATCATGCGAGTTCCTCTAA ATCCCCTATCGATGTTGCTCAATCGGCCACTGGATCAACCACTGACAACGCGGTAAAGAAGACTAGGGTTTCGATTCCGACGTCTACCGTTCAGAAAGGA TTGTCGATTTACACTCTGGCTCATCCACTGCCCAAGCCATCAGCAGTCGTAGGAGGCGATGATGCTTTGGTGGCCTTCGTTCGGAGGCAGCCTGGAAGCA GAAGGAAGGAGAAGGAGACTCCAATTGATGTGTCTTCTACAAAGAGCCATTCTAGCAACAATGTTGTTATTCCTCCATCTACTGTTCCGAGATCTTTGCT TTCCACGCCTGCTCATCCACTGGCCAAGCAAAATATCTCTATGCCGGCTCATCCACTGGCCAAGCCATCTTCGGACTCCGGGGCCAATGATGTTTCGGAA ACCTCTCCAGTTTATGTTCGAAGGCAGTCTGAAAGGAAAAGGAATGATAACGAGAATCCAATTGATGTGCCTTCTACAAGGAGCCGTTCTAGCAACAGAG TTTTGATTCCTCTATCTGCTGTTCAGAGGTCCTCGATTTCTACGCCTGCTCGTCCAGTGACCAGGCCATCTTCTATCCTTGGGGCCAATGATAGTTTGCA ACCCTCTCCGGTTTATGTTCGGAGACAGTCTGGAAGCAAAAGGAAGGAGAAGGAGAAGGAGAAAACAATTGATATGCCGGCTACAAAGATCCATTCTAGC AGCAGGGATAAAACGAAGAAAGATGGAGTTATTAATCTGTCCAAGCCGTCGGGGGCACCTAGTATAAAGGCTGAGAAGGTTGCAGTCAAACATACTCTGC CCAAAGATTTCATCGAGAAGCAGAAAGCATACTTCGCTGAAATAGATGCTTTTGATCTATCAGTAGAAGAGGTCACTGCGGCTGATGACTCGGAATGA
AA sequence Show only first row Show all	>Lus10030552 pacid=23140643 polypeptide=Lus10030552 locus=Lus10030552.g ID=Lus10030552.BGIv1.0 annot-version=v1.0 MESQHDGTRSSIGGKRKLPLSDCTNTVHIRSSTTSSSSSSSCSVLKKPFPVSFQFLDSQRHHASSSKSPIDVAQSATGSTTDNAVKKTRVSIPTSTVQKG LSIYTLAHPLPKPSAVVGGDDALVAFVRRQPGSRRKEKETPIDVSSTKSHSSNNVVIPPSTVPRSLLSTPAHPLAKQNISMPAHPLAKPSSDSGANDVSE TSPVYVRRQSERKRNDNENPIDVPSTRSRSSNRVLIPLSAVQRSSISTPARPVTRPSSILGANDSLQPSPVYVRRQSGSKRKEKEKEKTIDMPATKIHSS SRDKTKKDGVINLSKPSGAPSIKAEKVAVKHTLPKDFIEKQKAYFAEIDAFDLSVEEVTAADDSE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56250			unknown protein		Lus10030552 [exp]	0	1
AT2G30530			unknown protein		Lus10034444 [exp]	2.4	0.7730
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10016768 [exp]	7.3	0.7205
AT5G47840		AMK2	adenosine monophosphate kinase...		Lus10009477 [exp]	9.5	0.7710
AT2G45140		PVA12	plant VAP homolog 12 (.1)		Lus10015885 [exp]	13.9	0.7229
					Lus10021106 [exp]	14.1	0.7001
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10028781 [exp]	17.9	0.7176
AT4G02280		ATSUS3, SUS3	sucrose synthase 3 (.1)		Lus10001468 [exp]	18.0	0.6969
AT1G60200			splicing factor PWI domain-con...		Lus10013003 [exp]	25.0	0.7088
AT4G26240			unknown protein		Lus10012919 [exp]	30.2	0.7130
AT3G12040			DNA-3-methyladenine glycosylas...		Lus10021071 [exp]	38.3	0.6629

Compare expression of checked genes

Lus10030552 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.