Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18630 390 / 3e-136 ATUNG uracil dna glycosylase (.1) AT2G10550 0 / 1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012898 [exp] 536 / 0 AT3G18630 430 / 6e-152 uracil dna glycosylase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G169600 [exp] 418 / 1e-147 AT3G18630 384 / 3e-134 uracil dna glycosylase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03167 [flax] [poplar] UDG Uracil DNA glycosylase superfamily
Representative CDS sequence Show only first row Show all	>Lus10030553 pacid=23140569 polypeptide=Lus10030553 locus=Lus10030553.g ID=Lus10030553.BGIv1.0 annot-version=v1.0 ATGATCACTGTCTTTCACACTCTCCCGCTTCTCCGCCTCCTTCCATCCTCCTCCGACGCTGCCGCAATGAAGAACAAGAAAGCGACGGAGCCGCTATCCT CAGCAGCTTCCTCCAGAACAATCATGGACCTCTTGAACCCATCCAAGCGTCCCAAACTCTCTTCTCCGTCCAAACCCTCCCTCCTGCCTCTCGCCAAATC ATCCGCCGGAGATTCCTCTTCTTCTCTCTCCACATCTGCCCTCTCCGACGATCAGAAGTCCCGAGTTGAGTTCAACAAACTCCGCGCCAAGTCCAAGCGC AACCTCAAGCTCTGCTCCCAACTCGTTTCCAATTCCAAAGAAGAAGGCGTGGGTTATGTGAAACTTGAGGAGCTTCTGGTGGAGGAGACATGGTTGGAAG CCTTACGTGGAGAGCTCCAGAAGCCTTATGCTAAGACTCTGTGCAGTTTCGTCGAGAGCGAGATTCGAGGGGGTGGAGTTCCTATCTACCCGCCTCAGCA TTTGGTGTTCAATGCTCTTAACACCACTCCATTTGACAGAGTGAAAGTTGTGATCATTGGTCAAGATCCTTATCATGGTCCTGGGCAGGCTATGGGGCTT TCGTTCTCGGTCCCGGAAGGTGTCAAGAGTCCTTCGAGTCTCGTGAACATATTTAAGGAGCTTAAGCAGGATGTTGGATGCTCGGTTCCGTCTCATGGTA ATCTGGAGAAGTGGGCCATTCAGGGTGTGCTGCTACTTAATGCTGTTCTTACAGTTAGAGAGCGTCAGGCGAATTCTCATGCCAAGAAAGGATGGGAGCA ATTCACAGATGCTGTTATCAGAACGATTTCACAGAAGAAGAAGGGCGTTATTTTCCTCCTTTGGGGAAACTTTGCTCAAGAGAAATCCAGGTTGATTGAT GGGACAAAGCATCACATCCTCAAAGCAGCACACCCCTCTGGTCTCTCAGCACATAGGGGCTTTTTCGGCTGCAGTCATTTCTCTCAAGTAAACAAGCTCC TGGAGGAGATGGGAGCTCCACCGCTAGATTGGCAACTTTAA
AA sequence Show only first row Show all	>Lus10030553 pacid=23140569 polypeptide=Lus10030553 locus=Lus10030553.g ID=Lus10030553.BGIv1.0 annot-version=v1.0 MITVFHTLPLLRLLPSSSDAAAMKNKKATEPLSSAASSRTIMDLLNPSKRPKLSSPSKPSLLPLAKSSAGDSSSSLSTSALSDDQKSRVEFNKLRAKSKR NLKLCSQLVSNSKEEGVGYVKLEELLVEETWLEALRGELQKPYAKTLCSFVESEIRGGGVPIYPPQHLVFNALNTTPFDRVKVVIIGQDPYHGPGQAMGL SFSVPEGVKSPSSLVNIFKELKQDVGCSVPSHGNLEKWAIQGVLLLNAVLTVRERQANSHAKKGWEQFTDAVIRTISQKKKGVIFLLWGNFAQEKSRLID GTKHHILKAAHPSGLSAHRGFFGCSHFSQVNKLLEEMGAPPLDWQL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18630		ATUNG	uracil dna glycosylase (.1)		Lus10030553 [exp]	0	1
AT4G28310			unknown protein		Lus10039832 [exp]	10.2	0.8637
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Lus10010010 [exp]	12.6	0.8999
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Lus10040017 [exp]	16.0	0.8945
AT1G04730		CTF18	CHROMOSOME TRANSMISSION FIDELI...		Lus10043134 [exp]	22.6	0.8905
AT5G46740		UBP21	ubiquitin-specific protease 21...		Lus10043126 [exp]	23.8	0.8888
AT5G52910		ATIM	timeless family protein (.1)		Lus10014946 [exp]	28.4	0.8857
AT2G24490		ATRPA32A, RPA2,...	SUPPRESSOR OF ROS1, replicon p...		Lus10026954 [exp]	29.8	0.8806
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10024521 [exp]	31.7	0.8815
AT1G57800		ORTH3, VIM5	VARIANT IN METHYLATION 5, ORTH...		Lus10038731 [exp]	36.1	0.8794
AT3G42660			transducin family protein / WD...		Lus10034648 [exp]	37.5	0.8800

Compare expression of checked genes

Lus10030553 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.