Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19850 403 / 1e-133 Phototropic-responsive NPH3 family protein (.1) AT1G50280 377 / 6e-124 Phototropic-responsive NPH3 family protein (.1) AT3G22104 199 / 2e-56 Phototropic-responsive NPH3 family protein (.1) AT5G03250 172 / 5e-46 Phototropic-responsive NPH3 family protein (.1) AT1G30440 162 / 3e-42 Phototropic-responsive NPH3 family protein (.1) AT5G66560 162 / 4e-42 Phototropic-responsive NPH3 family protein (.1) AT3G44820 161 / 8e-42 Phototropic-responsive NPH3 family protein (.1) AT5G48800 157 / 9e-41 Phototropic-responsive NPH3 family protein (.1) AT3G08660 157 / 1e-40 Phototropic-responsive NPH3 family protein (.1) AT2G14820 155 / 5e-40 MEL3, NPY2 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012901 [exp] 1061 / 0 AT3G19850 415 / 3e-138 Phototropic-responsive NPH3 family protein (.1) Lus10034200 [exp] 458 / 7e-155 AT3G19850 390 / 1e-129 Phototropic-responsive NPH3 family protein (.1) Lus10029070 [exp] 200 / 6e-59 AT3G19850 174 / 3e-50 Phototropic-responsive NPH3 family protein (.1) Lus10039710 [exp] 203 / 1e-57 AT3G22104 433 / 9e-148 Phototropic-responsive NPH3 family protein (.1) Lus10018499 [exp] 199 / 5e-56 AT3G22104 420 / 2e-142 Phototropic-responsive NPH3 family protein (.1) Lus10013799 [exp] 169 / 2e-44 AT5G03250 672 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10015871 [exp] 167 / 5e-44 AT5G03250 666 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10026046 [exp] 167 / 1e-43 AT5G10250 639 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Lus10019522 [exp] 166 / 1e-43 AT3G44820 781 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G170900 [exp] 444 / 4e-149 AT3G19850 426 / 2e-143 Phototropic-responsive NPH3 family protein (.1) Potri.008G085500 [exp] 429 / 4e-143 AT3G19850 449 / 2e-152 Phototropic-responsive NPH3 family protein (.1) Potri.007G118800 [exp] 233 / 1e-68 AT3G22104 505 / 1e-175 Phototropic-responsive NPH3 family protein (.1) Potri.017G041600 [exp] 215 / 8e-62 AT3G22104 488 / 4e-169 Phototropic-responsive NPH3 family protein (.1) Potri.007G112600 [exp] 191 / 5e-52 AT5G64330 989 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.017G048200 [exp] 190 / 6e-52 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.004G030600 [exp] 182 / 6e-50 AT3G22104 313 / 1e-100 Phototropic-responsive NPH3 family protein (.1) Potri.011G032100 [exp] 180 / 3e-49 AT3G22104 309 / 4e-99 Phototropic-responsive NPH3 family protein (.1) Potri.016G139900 [exp] 166 / 1e-43 AT3G08570 723 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.007G033900 [exp] 166 / 2e-43 AT5G66560 789 / 0.0 Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03000 [flax] [poplar] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Lus10030554 pacid=23140783 polypeptide=Lus10030554 locus=Lus10030554.g ID=Lus10030554.BGIv1.0 annot-version=v1.0 ATGGCTTCCTCTGATCTCGCAATCCATGTCAATTCCCAGGAAACCTTCTTCCTCAACGAGAAAATCGTCTGCTTATACTTCGGCAAGCTGAGGAAGATAA TCAAACAAGAGAAGCGTCGGAACCAGATCAAGATTTCGGCAATCGAGATGGAAGACTTTCCTGGCGGGCCGGCGGGGTTCGAAAGAATCGCCGGATTCTG CTCCACCGGCGGTAAAATCAACCGCTCTGCCGCCAATGTCTCCCTCTTCCACTGCTCCGCCGTGTTCCTCGGAATGACGACGGAAGGCGGCGGAAACTTA CTCCGGCAGACGGAAGAGTTCCTCGCCGGAATCCTGGACTGGCCGCTCGCCGACGTCGTCGTTTGTCTTAAAACCTGTGACGGGTTCTTCCACTACGCCG ATTCGTTGGGGCTGGTTGGGAAGCTGGTTTCCGGGATGCTGGTGAAGATTTCTGATCGGGACAGGGTTTCGTCCGAGGATTCGAGAAGCTCGTCGGATTC GAGTAAAGCAGAATGGTGGTGGTTCGATGAATTGGTGGGTCTTTCTCCGATGGTGATTGAAATGATGGTGAAGAAGTTGGGAGCTTTCAGGTCGGAGAAT AACAGTTTGACGCTCACAAGGTTTCTCCTTCATTACCTCAAGAAGAGGGTCCCCCGAGCTAAGTCGATCGGAGCATCAAATTCAGGCTCAGTGCAACTAC CGGAGTTTAGCCTCGCTGACACAGCGATCCACGGAGTAATCTCATCCGGCCGGAATACATTCTCCTGCAGAGGGTTACTCTGCGTTCTGAGAGTGGTCTC AGCATTCAACCCCGCAGAGGGATTCAAAGGCCAATTAGAGAGGATGATTGGGGAGTTGCTTGATCAGGCTAGCTTGGATGATTTGTTAGTGTGTGGTGGA GGTGCAGGGGTTTACGATGTGGACCTGGTGATAAGACTGGTGAGGATATTTGTGCTGTCTATTAAGGAAGTAACAGAGAGCAGCCATGGAAGTAGCAGGA AGATGAAGAGGGTGGTGAGACTGCTTGATAAGTACCTGAGGGAGATATCACCTGATCATACCCTGGAGATGTCAAAGTTCTTGGAGGTTGCAGAGAGCTT GCCTAAGTCTGCTAGGGATTGCTTTGATGGTGTTTACAGAGCCATGGACATCTACCTTGAGTCACATCCGACGCTTTCCTTCGAGGAGAGGTCAAGGATA TGTCGATGCCTCGACTTTTCGAGACTTTCGATGGAAGCATGTAAAGAGATAGCTAAGAACCCCAAGATCCCACCTAACGTTGCAGTCCAGGCACTCATGT CTAAGAGATCATCATCATCTAACCACAACAACCACCACCTTTCTGCCGACCAGCCATCGACTACTCATCCTCGGAAGTCAAAAAGCGGCCGGTCTTCGAG CACTCCAAGCAGGGCATTAACGAAGAAGGACAACGCAGACTCTGATATCCAGTTGCGGAAGTACTCATGCAGTACTCCCACTCGAAAGTCGAGAAGCGGG CCCACAAATACTCCAAATAGAGTATTAACGAAGAAGGACAACACAGACTTCGATACCCAGCTCCGGAGGTACTCTTGTAGTACTCCTACTCGAAAGTCGA AAAGCGGGCCCACGAATACTCCAAATAGGGTTTCAATGAAGAAGGACAACACAAACTCTGATACTCATCTGCAGAAGTACTCTTGCAGTACTCCTGCAGC CAAAGGGAGAGTGTCGTTGGTGTGGAAACAGGGGGGAGAAGAAGATGAGGACGAGGTGGAGAAGAGGATGGTGAGGATGCAGAAGAGGGTTGTGGAGTTG GAGAGAGCTTGTCAAGACATGAAGAACCAGATGTCCAGAATGGAGAATCATGGTGGTGGTGATGAAGATGGTAGTAGTAGTAATAATGGGCTTAAGATTA TGGCTATGTCTTTTGGGTTTGGTAAGAACATGGGTAGAATCTGTTACTAA
AA sequence Show only first row Show all	>Lus10030554 pacid=23140783 polypeptide=Lus10030554 locus=Lus10030554.g ID=Lus10030554.BGIv1.0 annot-version=v1.0 MASSDLAIHVNSQETFFLNEKIVCLYFGKLRKIIKQEKRRNQIKISAIEMEDFPGGPAGFERIAGFCSTGGKINRSAANVSLFHCSAVFLGMTTEGGGNL LRQTEEFLAGILDWPLADVVVCLKTCDGFFHYADSLGLVGKLVSGMLVKISDRDRVSSEDSRSSSDSSKAEWWWFDELVGLSPMVIEMMVKKLGAFRSEN NSLTLTRFLLHYLKKRVPRAKSIGASNSGSVQLPEFSLADTAIHGVISSGRNTFSCRGLLCVLRVVSAFNPAEGFKGQLERMIGELLDQASLDDLLVCGG GAGVYDVDLVIRLVRIFVLSIKEVTESSHGSSRKMKRVVRLLDKYLREISPDHTLEMSKFLEVAESLPKSARDCFDGVYRAMDIYLESHPTLSFEERSRI CRCLDFSRLSMEACKEIAKNPKIPPNVAVQALMSKRSSSSNHNNHHLSADQPSTTHPRKSKSGRSSSTPSRALTKKDNADSDIQLRKYSCSTPTRKSRSG PTNTPNRVLTKKDNTDFDTQLRRYSCSTPTRKSKSGPTNTPNRVSMKKDNTNSDTHLQKYSCSTPAAKGRVSLVWKQGGEEDEDEVEKRMVRMQKRVVEL ERACQDMKNQMSRMENHGGGDEDGSSSNNGLKIMAMSFGFGKNMGRICY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19850			Phototropic-responsive NPH3 fa...		Lus10030554 [exp]	0	1
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Lus10004670 [exp]	2.0	0.9626
AT5G10830			S-adenosyl-L-methionine-depend...		Lus10024476 [exp]	2.4	0.9550
AT2G38300	GARP		myb-like HTH transcriptional r...		Lus10002207 [exp]	4.2	0.9498
AT1G06290		ATACX3, ACX3	acyl-CoA oxidase 3 (.1)		Lus10016249 [exp]	5.7	0.9438
AT2G33640			DHHC-type zinc finger family p...		Lus10016036 [exp]	5.9	0.9366
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10002661 [exp]	6.9	0.9232
AT1G52140			unknown protein		Lus10006040 [exp]	6.9	0.9404
AT2G38300	GARP		myb-like HTH transcriptional r...		Lus10012239 [exp]	7.4	0.9414
AT3G07570			Cytochrome b561/ferric reducta...		Lus10016080 [exp]	10.4	0.9344
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10002075 [exp]	12.6	0.9349

Compare expression of checked genes

Lus10030554 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.