Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50300 321 / 1e-106 TAF15 TBP-associated factor 15 (.1) AT5G58470 59 / 3e-09 TAF15b TBP-associated factor 15B (.1.2) AT5G16260 51 / 1e-06 ELF9 EARLY FLOWERING 9, RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT4G19610 50 / 3e-06 nucleotide binding;nucleic acid binding;RNA binding (.1) AT4G13860 39 / 0.0009 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012902 [exp] 431 / 2e-149 AT1G50300 388 / 4e-134 TBP-associated factor 15 (.1) Lus10042268 [exp] 62 / 4e-10 AT1G50300 220 / 8e-67 TBP-associated factor 15 (.1) Lus10026388 [exp] 61 / 7e-10 AT5G58470 219 / 1e-66 TBP-associated factor 15B (.1.2) Lus10040636 [exp] 51 / 2e-06 AT4G19610 700 / 0.0 nucleotide binding;nucleic acid binding;RNA binding (.1) Lus10018277 [exp] 48 / 2e-05 AT4G19610 770 / 0.0 nucleotide binding;nucleic acid binding;RNA binding (.1) Lus10026858 [exp] 45 / 0.0001 AT5G16260 566 / 0.0 EARLY FLOWERING 9, RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10020230 [exp] 45 / 0.0001 AT5G16260 508 / 8e-177 EARLY FLOWERING 9, RNA binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G170700 [exp] 358 / 8e-121 AT1G50300 320 / 2e-107 TBP-associated factor 15 (.1) Potri.008G085400 [exp] 342 / 8e-115 AT1G50300 339 / 6e-115 TBP-associated factor 15 (.1) Potri.001G281300 [exp] 58 / 6e-09 AT5G58470 198 / 1e-58 TBP-associated factor 15B (.1.2) Potri.008G078200 [exp] 54 / 2e-07 AT5G16260 495 / 3e-171 EARLY FLOWERING 9, RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G076600 [exp] 52 / 4e-07 AT5G58470 199 / 4e-59 TBP-associated factor 15B (.1.2) Potri.010G179000 [exp] 51 / 1e-06 AT5G16260 533 / 0.0 EARLY FLOWERING 9, RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.003G149600 [exp] 47 / 2e-05 AT4G19610 646 / 0.0 nucleotide binding;nucleic acid binding;RNA binding (.1) Potri.010G203200 [exp] 43 / 0.0002 AT3G55460 144 / 1e-41 SC35-like splicing factor 30 (.1) Potri.003G218600 [exp] 42 / 0.0005 AT3G13570 177 / 7e-55 SC35-like splicing factor 30A (.1) Potri.001G056000 [exp] 42 / 0.0007 AT1G67325 340 / 5e-118 Ran BP2/NZF zinc finger-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00641 [flax] [poplar] zf-RanBP Zn-finger in Ran binding protein and others CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10030555 pacid=23140601 polypeptide=Lus10030555 locus=Lus10030555.g ID=Lus10030555.BGIv1.0 annot-version=v1.0 ATGGCTTACGCACAGAAAGGCGGACCAACGAATGGATCTGTTTACGTGTGTAACTTGCCTGATGGAACGGATGAAGATATGCTGGCAGAACATTTTGGCA CCATTGGATTGCTAAAGAAAGACAAGCGAACCGGTCGTCCCAAAGTATGGTTATATCGTGACAAAACGACGAATGAGCCAAAGGGGGATGCAACCGTTAC TTACGAGGATCCTCATGCTGCTCTAGCAGCTGTTGAGTGGTTCAACAACAAGGAGTTTCATGGTAGTGTAATTGGAGTCCTCATGGCGGAGTCTAAGAGT AAAGATGATATGCCTTATAGTGCTGTGCCTGATACGAATCCGGCTGTTGATTTTGGTGGGGTGGAGGAAGGTACTGGGGATGTCAATGGTGGTGGTGGAA GAGGTAGAGGAAGGGGTGGTGATGCTTCGGGGAAAGCGTGGCAACAAGATGGAGATTGGTTGTGTCCGAATACAAGCAGTTGCACAAATGTTAACTTTGC ATTTCGCGGGGTGTGCAATCGTTGTGGAACTGCTCGACCTTCTGGTGCATCTGGCGGTGGTGGAGGGGCAGCTGGTCGTGGTAGGGGTCGAGGTGGTCCT GAACCTGGACGAGCTGTTGGTGCTACTTCGAAGCTTTTTGGTCCCAATGATTGGCCTTGTCCAATGTGTGGCAATATCAATTGGGCAAAGCGTCTGAAGT GCAATGTATGCAACACTAACAAACCTGGTCAGAATGAGGGCGGTGTGAGAGGTGGGCGTGGAGGTGGATACAAAGAACTCGACGAAGAGGAGATAGAGGA AACAAGGCGACGTCGAAAGGAAGCTGAAGATGATGACGGCGAGATGTACGATGAATTTGGAAACTTGAAGAAGAAGTACCGAGTCAAAACCCAGCAACCC GAAGTGGCCAAAACTGTACCGGGCGCCGGGCGTGCCGGATGGGAGGTCGACGAACTGGGTGAGTACTTTTTGCACATTCTTAAAGTCATTCTGGTCCATT TCCTACTTCTCTTTATCGTACTCATTTATGTAAAGGAGGAGGGAGAGAGAAGAGCAGAGAGAGAGGGAGGGATCGAGATAGCGGCAGGAGCAGGGATCGG AACGACAGGGACAGACGTCGCAGCCGAAGCAGAGAGAGGGATAGGGGAAGGGATCGTGATCGAGACCGTGATTTCGATTATGATCAAGACAGTCGAGAGT ATGGTCGCGATAGGGATCGCGAACGTAACAGGTACCGACATTGATGAGATTCCTATGGAGGAGCAGAGGTCCCAAGTTTTCTTTTGTTTCAAATTTTCTT TCTGGAGACTCTTGAGAGTTTTGGTTGTGGAAATGAAATGTTTGGGTCAGTTTATTTATGGAGAGTTTTTGTAA
AA sequence Show only first row Show all	>Lus10030555 pacid=23140601 polypeptide=Lus10030555 locus=Lus10030555.g ID=Lus10030555.BGIv1.0 annot-version=v1.0 MAYAQKGGPTNGSVYVCNLPDGTDEDMLAEHFGTIGLLKKDKRTGRPKVWLYRDKTTNEPKGDATVTYEDPHAALAAVEWFNNKEFHGSVIGVLMAESKS KDDMPYSAVPDTNPAVDFGGVEEGTGDVNGGGGRGRGRGGDASGKAWQQDGDWLCPNTSSCTNVNFAFRGVCNRCGTARPSGASGGGGGAAGRGRGRGGP EPGRAVGATSKLFGPNDWPCPMCGNINWAKRLKCNVCNTNKPGQNEGGVRGGRGGGYKELDEEEIEETRRRRKEAEDDDGEMYDEFGNLKKKYRVKTQQP EVAKTVPGAGRAGWEVDELGEYFLHILKVILVHFLLLFIVLIYVKEEGERRAEREGGIEIAAGAGIGTTGTDVAAEAERGIGEGIVIETVISIMIKTVES MVAIGIANVTGTDIDEIPMEEQRSQVFFCFKFSFWRLLRVLVVEMKCLGQFIYGEFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50300		TAF15	TBP-associated factor 15 (.1)		Lus10030555 [exp]	0	1
AT1G50300		TAF15	TBP-associated factor 15 (.1)		Lus10012902 [exp]	2.0	0.8369
AT3G19895			RING/U-box superfamily protein...		Lus10034201 [exp]	3.2	0.8258
AT5G19900			PRLI-interacting factor, putat...		Lus10000189 [exp]	4.2	0.8421
AT5G55130		SIR1, CNX5	SIRTINOL RESISTANT 1, "co-fact...		Lus10000697 [exp]	6.5	0.7963
AT5G11500			unknown protein		Lus10038625 [exp]	6.9	0.8359
AT2G25670			unknown protein		Lus10033084 [exp]	8.1	0.8240
AT5G17900			microfibrillar-associated prot...		Lus10005672 [exp]	9.2	0.8198
AT2G02880			mucin-related (.1)		Lus10030486 [exp]	9.8	0.7990
AT5G19900			PRLI-interacting factor, putat...		Lus10019670 [exp]	14.4	0.8319
AT5G20130			unknown protein		Lus10038580 [exp]	15.7	0.7671

Compare expression of checked genes

Lus10030555 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.