Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19870 1023 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012903 [exp] 1962 / 0 AT3G19870 1053 / 0.0 unknown protein Lus10008394 [exp] 105 / 7e-26 AT3G19870 71 / 2e-14 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G085300 [exp] 1319 / 0 AT3G19870 1056 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030556 pacid=23140638 polypeptide=Lus10030556 locus=Lus10030556.g ID=Lus10030556.BGIv1.0 annot-version=v1.0 ATGACCGACGAAAACCCACCACAGCCACACCACCTCCCGCCGCCGGCGAAGCCAATCACTTCACAAGACTGGGAGCTACTCATCGACGACTTCCAGCACG GCGGTCCCCTCTTCCACAAATGGACATCCAGCCACACCAACCTTAACCTAATCCTCGACCACACCTTCTCCCATCTCCACCGGAAAGACTTCCCCCACAA GCTCCCGCTCCTCCTCTTCCTCGAAGAATTCTCCGACCACTTCTTCACAGACTCCTCCCACCTCGACAGACTCCTCGACCTCCTCCGCTCCTTCGTCCAA GCTCCGCTCGATGGGATCTCCGTCACTTTCGCGATCAAGGAGCAGTTCATGCTCTCCTCCACTTCGATCTTCATCTCCGTCGATTCTCTATCCCGATTCC CTCCCAACCAGACCGAATCCCTCGTCGAATTGCTGCTCACCGTCATCAATCGCCCTAACCACGGCGTCGATCGGCAGACTCGAGCGATCGCCAGCGAGTG CCTCCGCGAGCTCGAGCGATGCTATCCTTGCTTGCTGTCGGCGATCGTCGGCCATCTGTGGAGCCTCTGTCAGAGTGAGCGAACTCACGCCTGTCAGTCT TACATGTTATTGTTTGCCGCCGTTGTTCATAGCATCGTTGATAGGAAGCTGAACGTTTCCATTGCCAATACCTCTGTTCCCTTGGTTCCGTTTAATGTGC CTCAAGCTGTTACTGGATTCGATTCCAGTAGTAGTGATAGTAACGGAAGCTTGAATTTCAAGGAACTGAGGAGAGCAATGGCGTTCTTGCTAGAATCGCC TCAGGTTTTAACTCCATGTGGAATGATGGAATTTCTAAGCTTGATAATGCCAGTAGCTTTAGCTCTAGAGTTGCAGCCTTCCATGTTGAAGGTACAGTTC TTGAGGATGATCTACTCCTTCAATCCTTTGCTGTGTCATGTTGTGTTAGTTATGTATTCTCAATTCATCGATGCTTTCGATGGACAAGAGGAGGAAATTG TTGGCCGGCTGATCCTCATTTCGAAGGAGACACAGCATTACTTGGTGTTTAGGTTACTTGCACTCCACTGGTCTCTTGGATTCTTGAGTAGGCTGGTGGT AGGGAAAGGGATTCAGAGGAATAAGTCGGTTATCGAGATGGGGAAGAAGTTTTATCCTGACCTGTTTGATCCGCTTGCTTTGAAAGCACTGAGGCTCGAT ATGCTGGCGTTGTGCTCCATATGGCTTGAGAAATCTGGAAGTGAGGTCGGTTTTGATGGGAAGGTAGGCAATGGGAGTTCTGTAGTGAAGCTGTTTGATA TCGGTCTTGCTTCGATCTCATCATTTAAATGGTTACCTTCTTCGAGCACTGAGACGGCTGTTGCGTTCCGCTCCTTTCATAAGTTTCTGATTGGTGTTTC GTCCCCTAATGATGCTTATCCTTCTGAATCTGCACCGGCCACGGATTCTAGCGTGTTGTGTTCATTACAGAGGATGCTCGTGGACATGACGCTGGCATAT CCCAAACTGGTCCTAGTAATTTCTTCCTTTGTCGACCGTTTGCTAGGCTGCAAAACTCATCGCTACTTGGGAGAGCTTCAGCTTCAGACAGCCGATCGGT GTTTACTTCCGAAACTAAAAGTAGACTATAGACTAGTTTCGTACTTCCCTATTTTTGATAGAATCGCAGAGAACAAAATGATACCTCCTCATGGATTATT GGACGTGCTTATCAAATTCATGATGTTCCTTGTCGAAAAGCATGGTCCCGATTCTGGATTGAAGTCTTGGTCGCGAGGAAGCAGTGTTCTGTGTATCTGC CGAACAATGCTAATGCATCACAGTAGCTCTAGACTGTTCCTTGGGTTATCTCACCTCCTTGCATTCACTTGCCTGTACTTCCCTGATCTAGAGGTCCGTG ACAACGCAAGGATCTACTTGCGGATGCTGATATGCATCCCGGGGGTGAAGCTCAGAAGAATACTTGGTTTCGGGGACCAAATCCTTAGCGCCACTCCGTC CCCTCTTTCCAACTCTTTTTTCAGTGTGCAGTCTCCTCGACACCATCCGGATATCAAGAAGTGCCAGAACATCTCGTCGTATATCCATCTCGACCGAATG ATACCATTGCTCATTAAGCAGAGTTGGTCCTTGTCTTTATCTCCTTTGGGTATCGGTGGCCGGAAGCCTGATTTCTCGGTCCCTGTTGAATCAAGGGAGG CAGACAGTGGCGGAAGAACAGAAAGTACAAGTGGGAGCGGAATCAACTCCTCGCGGGAGACTTTACGAGTAATGGACGCTAAGATATCCGAGATCTTGGG AACACTCAGGAAGCACTTCTCTTGCATTCCTGATTACCGGCACATGCCGGGGCTTAAGATAAGGATAACTTGCTCCCTTAGATTTGATGCCAAGACGTTT ACCAGCATATGGGGTGGTGGTGATTCTGGCACAAATCAGTCAGATGTGGATTCGCTTCCTGCGCTTTACGCAACTCTGCTGAAGTTCTCGTCGTCAGCAC CATACGGTCCGATTCCACCGTTTCGAATTCCCTTTCTTCTGGGCGAGCCACCCAGAACCGATCCTGTTCCTGATCAACCTTCACTGGACATTGTACCAGC TAGAGATTATTCCGAGGAGGAATGCTTCAGAGTTCCCGTAACAGTCGATTTGGAGCCCCGAGAGCCGACGCCCGGTCTGGTTGACGTTTCACTCGAAGCG AACACGGAAACCGGTCAGATAATCAACGGTCAGCTCCAGGGCATCTCGGTCGGCATAGAGGACATGTTTCTCAAGGCTATTCCTCCTGCTGACATTCTAG AAGATACACTTCCAGTCTATTACTCGGAACTATTCGACGCGCTGTGGGAAGCATGCAGTGGCTCTTCGAGCATCGGGCGCGAGGTGTTTCCGTTACAGGG AGGGAAAGGTAATGCAGCGATAACCGGTACTCGTTCGGTCAAGTTGCTCGAAATCCCTGCTCACTCGTTGATCCAGGCCATCGAGCTGTATCTGGCACCT TTCGTGGTAAGCGTGATTGGCGAACAGCTCGTCGACATGGTGAGGGACGGTGGGATCATTAGAAACGTCGTGTGGAAGGATTCTGTTCCCGATTCTCCAA AGGAGAGTCGGGAACCGAGTGTCGGGGTCGAACCTTTCGTGGTAAGCGTGATTGGCGAACAGCTCGTCGACATGGTGAGGGACGGTGGGATCATTAGAAA CGTCGTGTGGAAGGATTCTGTTCCCGATTCTCCAAAGGAGAGTCGGGAACCGAGTGTCGGGTTCGAGTCTGGTCCTCTCCATCTTACTTACAACGATGAT GATGACGACGACGAAAGGGGAGAGTGTGATATGATTGTCCCAAGTGGAAAAGTAAGCAGCAGTAGAAGGAACCTGGGAACTATTCTGGTACTGATATTCC TCCCACCAAGGTTTCATCTCTTGTTCCAGATGGAAGTTACAGACCTTTCGACATTGGTTCGGATCAGAACCGATCACTGGCCGTGCTTAGCGTACATCGA TGATTATTTGGAGGCTTTGTTTTTGACATAA
AA sequence Show only first row Show all	>Lus10030556 pacid=23140638 polypeptide=Lus10030556 locus=Lus10030556.g ID=Lus10030556.BGIv1.0 annot-version=v1.0 MTDENPPQPHHLPPPAKPITSQDWELLIDDFQHGGPLFHKWTSSHTNLNLILDHTFSHLHRKDFPHKLPLLLFLEEFSDHFFTDSSHLDRLLDLLRSFVQ APLDGISVTFAIKEQFMLSSTSIFISVDSLSRFPPNQTESLVELLLTVINRPNHGVDRQTRAIASECLRELERCYPCLLSAIVGHLWSLCQSERTHACQS YMLLFAAVVHSIVDRKLNVSIANTSVPLVPFNVPQAVTGFDSSSSDSNGSLNFKELRRAMAFLLESPQVLTPCGMMEFLSLIMPVALALELQPSMLKVQF LRMIYSFNPLLCHVVLVMYSQFIDAFDGQEEEIVGRLILISKETQHYLVFRLLALHWSLGFLSRLVVGKGIQRNKSVIEMGKKFYPDLFDPLALKALRLD MLALCSIWLEKSGSEVGFDGKVGNGSSVVKLFDIGLASISSFKWLPSSSTETAVAFRSFHKFLIGVSSPNDAYPSESAPATDSSVLCSLQRMLVDMTLAY PKLVLVISSFVDRLLGCKTHRYLGELQLQTADRCLLPKLKVDYRLVSYFPIFDRIAENKMIPPHGLLDVLIKFMMFLVEKHGPDSGLKSWSRGSSVLCIC RTMLMHHSSSRLFLGLSHLLAFTCLYFPDLEVRDNARIYLRMLICIPGVKLRRILGFGDQILSATPSPLSNSFFSVQSPRHHPDIKKCQNISSYIHLDRM IPLLIKQSWSLSLSPLGIGGRKPDFSVPVESREADSGGRTESTSGSGINSSRETLRVMDAKISEILGTLRKHFSCIPDYRHMPGLKIRITCSLRFDAKTF TSIWGGGDSGTNQSDVDSLPALYATLLKFSSSAPYGPIPPFRIPFLLGEPPRTDPVPDQPSLDIVPARDYSEEECFRVPVTVDLEPREPTPGLVDVSLEA NTETGQIINGQLQGISVGIEDMFLKAIPPADILEDTLPVYYSELFDALWEACSGSSSIGREVFPLQGGKGNAAITGTRSVKLLEIPAHSLIQAIELYLAP FVVSVIGEQLVDMVRDGGIIRNVVWKDSVPDSPKESREPSVGVEPFVVSVIGEQLVDMVRDGGIIRNVVWKDSVPDSPKESREPSVGFESGPLHLTYNDD DDDDERGECDMIVPSGKVSSSRRNLGTILVLIFLPPRFHLLFQMEVTDLSTLVRIRTDHWPCLAYIDDYLEALFLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19870			unknown protein		Lus10030556 [exp]	0	1
AT3G19870			unknown protein		Lus10012903 [exp]	1.0	0.9541
AT5G13390		NEF1	no exine formation 1 (.1)		Lus10002569 [exp]	1.4	0.9233
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Lus10015337 [exp]	3.5	0.9116
AT5G13390		NEF1	no exine formation 1 (.1)		Lus10001797 [exp]	3.5	0.9160
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Lus10015176 [exp]	4.5	0.9111
AT5G44370		PHT4;6	phosphate transporter 4;6 (.1)		Lus10026551 [exp]	5.2	0.8987
AT2G20810		GAUT10, LGT4	galacturonosyltransferase 10 (...		Lus10039784 [exp]	7.2	0.8725
AT1G50380			Prolyl oligopeptidase family p...		Lus10015387 [exp]	7.5	0.8880
AT1G51540			Galactose oxidase/kelch repeat...		Lus10034826 [exp]	8.1	0.8919
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10037140 [exp]	8.1	0.9082

Compare expression of checked genes

Lus10030556 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.