Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03050 126 / 3e-38 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012904 [exp] 239 / 1e-82 AT5G03050 129 / 4e-39 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G110300 [exp] 133 / 5e-41 AT5G03050 156 / 5e-50 unknown protein Potri.002G184600 [exp] 79 / 1e-19 AT5G03050 0 / 1 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030557 pacid=23140693 polypeptide=Lus10030557 locus=Lus10030557.g ID=Lus10030557.BGIv1.0 annot-version=v1.0 ATGGACGAGAAAGATGGAGATGGGAACGATCCATCAGTTAAGCGCAGGAATTTGGGAATGGACGAGAAGAATCGAGATGGAGACTATCCATCGGGTTTAG AAGTTGCAGAGGTAGAGGAGGATGAGCCAGCAGAAGGAAGCATTGTTGTTTCCGATGAGATGGAAGCTAACATCTCTCAGATCATGGAGAGGATCGAACG CTTCACTCAAATGGTTTCTGAGATGCTAGATTCTGGGAAAGCGATGTTTAAGGAGCTAAGCAACGAATTTGAGGAACGACTGGTTGCAATCCACAAGCAA CAGGTTGACCAGTGGCAAGAAGACATTAAGGAATTAAGGTTCATTGATGCTTCGAACGAGGAGATCAATGCTGTTCTGCTCAATGCTAGCTACATGCTTC ACAACCCTAAGGGGGAATCTTGA
AA sequence Show only first row Show all	>Lus10030557 pacid=23140693 polypeptide=Lus10030557 locus=Lus10030557.g ID=Lus10030557.BGIv1.0 annot-version=v1.0 MDEKDGDGNDPSVKRRNLGMDEKNRDGDYPSGLEVAEVEEDEPAEGSIVVSDEMEANISQIMERIERFTQMVSEMLDSGKAMFKELSNEFEERLVAIHKQ QVDQWQEDIKELRFIDASNEEINAVLLNASYMLHNPKGES

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03050			unknown protein		Lus10030557 [exp]	0	1
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10003585 [exp]	3.7	0.8127
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10013268 [exp]	5.3	0.8127
AT3G05950			RmlC-like cupins superfamily p...		Lus10035280 [exp]	6.5	0.8127
AT2G45570		CYP76C2	"cytochrome P450, family 76, s...		Lus10040353 [exp]	6.9	0.8002
					Lus10041736 [exp]	7.5	0.6767
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10003345 [exp]	7.5	0.8127
AT3G30210	MYB	ATMYB121	myb domain protein 121 (.1)		Lus10005079 [exp]	7.7	0.8117
AT3G04380		SDG31, SUVR4	SET DOMAIN PROTEIN 31, SET-dom...		Lus10005476 [exp]	9.9	0.8041
AT4G21690		ATGA3OX3	ARABIDOPSIS THALIANA GIBBERELL...		Lus10013134 [exp]	11.2	0.7959
					Lus10027457 [exp]	12.4	0.7920

Compare expression of checked genes

Lus10030557 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.