Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48520 850 / 0 GATB GLU-ADT subunit B (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012905 [exp] 1091 / 0 AT1G48520 868 / 0.0 GLU-ADT subunit B (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G172700 [exp] 902 / 0 AT1G48520 842 / 0.0 GLU-ADT subunit B (.1.2.3) Potri.010G064700 [exp] 773 / 0 AT1G48520 753 / 0.0 GLU-ADT subunit B (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0286 [flax] [poplar] GCS PF02934 [flax] [poplar] GatB_N GatB/GatE catalytic domain CL0279 [flax] [poplar] GatB_YqeY PF02637 [flax] [poplar] GatB_Yqey GatB domain
Representative CDS sequence Show only first row Show all	>Lus10030559 pacid=23140755 polypeptide=Lus10030559 locus=Lus10030559.g ID=Lus10030559.BGIv1.0 annot-version=v1.0 ATGGGTTCCACATTGTTGAGAAACATCCAAGCTCAGCCATTGTTTCACTATCCATCCGCTTTGTTCAGAAGGAGCAATGGCGTTCTGTATTGCATGACCA CTACAGCCACCTCACAGACATCTCCACAGATCAATGTTTCGCCACAGAAGAAAGCCGCGGCCAATCCACTCGACAAAATCTCGAAAGATTTCGAGGCAGT CATCGGGATAGAAACCCACGTCCAGCTATCAACACTGACCAAGGCATTCTGCAGCTGTCCTTACAGCTACGGTGCTCAGCCAAACACTTGTGTCTGCCCG GTTTGCATGGGTCTACCCGGTGCTCTACCTGTTCTTAACTCGAAAGTCATCGAATCTGCTGTAAAACTAGGCCTTGCCCTCAACTGCAAGCTCTCCTTCA CCTCCAAATTCGACAGGAAGCAGTATTTCTACCCAGACCTTCCGAAAGGTTACCAGATATCTCAATTCGATATCCCGATCGCGAGTGGCGGATCTATTGA CCTGGACCTGCCACTCGAATTCGGTGGCGGTCATAGAAAGTTCGGCATCACGAGAATTCACATGGAAGAGGACGCTGGGAAGCTGATGCATTCAGGGAAC GGAAGCTACTCGCAGGTTGATTTGAATCGAGCTGGAGTGCCGTTGTTGGAGATCGTTTCGGAACCGGATATGAGAACCGGCATCGAAGCTGCTGAGTACG GAGCAGAGATTCAAAGAGTCGTTCGGTATTTGGGGATCAGCAATGGTAATATGCAGGAAGGCTCGCTTCGTTGCGATGTGAATGTCTCGGTTCGACTGAT CGGACAGGCAGAATTCGGAACAAAGGTTGAGATAAAGAACTTGAATTCGTTTTCGTCAATGAGTCGAGCCATTGACTATGAGATATCAAGGCAGGTCGGC CTCCACAGTCAGGGCCAACAAGATTCGATCGTACAGGAAACTCGCCTTTGGGAAGATGGCGGTCAGAAAACAGTTACAATGAGGAAAAAGGAAGGGCTTT CGGACTACCGGTACTTCCCGGAACCGGATCTTCCGGAAGTTATCCTTACGAAAGAGTTCGTCGATAATGCTAGTGAATTGCTGCCAGAACTTCCGGAAGC GAAACGTAGGAGGTACGAGAAGATGGGACTGAGCATGCAAGATGTTCTGTTCCTTGCAAATGATATGGATGTGGCGGACTTTTTCGATACAACACTCGCA AAGGGAGCTGACGTGAAGCTAGCTGCGAACTGGATCATGGGCGACATGGCTGCTTACTTGAAAAACGAGAAGCTGTCGATACACGACATCAAACTTGTGC CCGAAGAGCTCGCTGAGCTGATAGCTTCGATCAAAAGCGGGACGATTAGTGGCAAGATTGGGAAAGAGATACTGTTCGAGCTCATGGCTAAAGGCGGGAC GGTGAAGAGAATGATCAAAGAGAAGGATCTTATAACGGATCTTGGTGAGATTGAGAAGATGATTGATAAGGTGATTGCAGAGAACCAGAAGCAGTTACAA CAATATAGATCAGGGAAGACTAAGCTACAGGGTTACTTTGCCGGCCAGGTAATGAAGGAATCAAAAGGCAAGGCGAACCCGGGACTGTTGAACAAGATAC TCATCGAGAAACTGAACGCCAAAGAGTGA
AA sequence Show only first row Show all	>Lus10030559 pacid=23140755 polypeptide=Lus10030559 locus=Lus10030559.g ID=Lus10030559.BGIv1.0 annot-version=v1.0 MGSTLLRNIQAQPLFHYPSALFRRSNGVLYCMTTTATSQTSPQINVSPQKKAAANPLDKISKDFEAVIGIETHVQLSTLTKAFCSCPYSYGAQPNTCVCP VCMGLPGALPVLNSKVIESAVKLGLALNCKLSFTSKFDRKQYFYPDLPKGYQISQFDIPIASGGSIDLDLPLEFGGGHRKFGITRIHMEEDAGKLMHSGN GSYSQVDLNRAGVPLLEIVSEPDMRTGIEAAEYGAEIQRVVRYLGISNGNMQEGSLRCDVNVSVRLIGQAEFGTKVEIKNLNSFSSMSRAIDYEISRQVG LHSQGQQDSIVQETRLWEDGGQKTVTMRKKEGLSDYRYFPEPDLPEVILTKEFVDNASELLPELPEAKRRRYEKMGLSMQDVLFLANDMDVADFFDTTLA KGADVKLAANWIMGDMAAYLKNEKLSIHDIKLVPEELAELIASIKSGTISGKIGKEILFELMAKGGTVKRMIKEKDLITDLGEIEKMIDKVIAENQKQLQ QYRSGKTKLQGYFAGQVMKESKGKANPGLLNKILIEKLNAKE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48520		GATB	GLU-ADT subunit B (.1.2.3)		Lus10030559 [exp]	0	1
AT5G57030		LUT2	LUTEIN DEFICIENT 2, Lycopene b...		Lus10017156 [exp]	1.4	0.9236
AT4G36390			Methylthiotransferase (.1)		Lus10041793 [exp]	2.2	0.9290
AT4G36390			Methylthiotransferase (.1)		Lus10028344 [exp]	2.4	0.9157
AT3G44160			Outer membrane OMP85 family pr...		Lus10013360 [exp]	5.3	0.8943
AT4G24175			unknown protein		Lus10013559 [exp]	10.0	0.8848
AT1G75010		ARC3	ACCUMULATION AND REPLICATION O...		Lus10031930 [exp]	11.3	0.8919
AT2G34640		HMR, PTAC12	HEMERA, plastid transcriptiona...		Lus10023283 [exp]	12.2	0.8932
AT1G74850		PDE343, PTAC2	PIGMENT DEFECTIVE 343, plastid...		Lus10036651 [exp]	12.2	0.9105
AT5G50250		CP31B	chloroplast RNA-binding protei...		Lus10017962 [exp]	13.3	0.8838
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Lus10039049 [exp]	14.0	0.8965

Compare expression of checked genes

Lus10030559 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.