Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28150 105 / 3e-30 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012907 [exp] 257 / 6e-90 AT1G28150 109 / 9e-32 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G066900 [exp] 105 / 6e-30 AT1G28150 112 / 7e-33 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030561 pacid=23140686 polypeptide=Lus10030561 locus=Lus10030561.g ID=Lus10030561.BGIv1.0 annot-version=v1.0 ATGGTGGGGATTGTAGCTGCCGGTTCAGCTGTTCCGTCTATGGTGTTGAGGAATTCCCGGCCGTGGATGAACAATTGTGTGGTTGGGACAAGCTTCGGGG ATCGGAAGATTGGGGTTGGTATGAATAATAGGAGAAGAAGGTCACTGCTTAAGGCTGGGCCACCCTCTTCTTTCTTCTGCAACCCCACTGATGATCCCAT CCTCAAGGATGCTCTCAAGGAGCCGGTTGCGTTCCTGGGAGGGATGTTTGCGGGACTATTGAGGCTCGATCTGAACGAAGAGCCGCTCAAGGAATGGGTG ACGAGAACCGTGGAAGCCTCTGGGATCAAAGAAGAAATAGATGTTGAAGCTGGAAAAGAAGCTGCTGATGGTGATGAATCCCCTCAGCAGATACAGATAG AATGA
AA sequence Show only first row Show all	>Lus10030561 pacid=23140686 polypeptide=Lus10030561 locus=Lus10030561.g ID=Lus10030561.BGIv1.0 annot-version=v1.0 MVGIVAAGSAVPSMVLRNSRPWMNNCVVGTSFGDRKIGVGMNNRRRRSLLKAGPPSSFFCNPTDDPILKDALKEPVAFLGGMFAGLLRLDLNEEPLKEWV TRTVEASGIKEEIDVEAGKEAADGDESPQQIQIE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28150			unknown protein		Lus10030561 [exp]	0	1
AT2G41475			Embryo-specific protein 3, (AT...		Lus10043273 [exp]	2.4	0.8170
AT2G44650		CHL-CPN10	chloroplast chaperonin 10 (.1)		Lus10043345 [exp]	4.5	0.8160
AT3G27160		GHS1	GLUCOSE HYPERSENSITIVE 1, Ribo...		Lus10041564 [exp]	11.3	0.8193
AT1G28150			unknown protein		Lus10012907 [exp]	14.2	0.8186
AT3G12260			LYR family of Fe/S cluster bio...		Lus10008661 [exp]	16.1	0.7273
AT5G52010	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10024807 [exp]	25.5	0.7568
AT1G67660			Restriction endonuclease, type...		Lus10006437 [exp]	31.9	0.7553
AT3G25580			Thioredoxin superfamily protei...		Lus10026602 [exp]	35.9	0.7385
AT2G40490		HEME2	Uroporphyrinogen decarboxylase...		Lus10030544 [exp]	38.1	0.8121
AT1G31790			Tetratricopeptide repeat (TPR)...		Lus10035697 [exp]	39.1	0.7296

Compare expression of checked genes

Lus10030561 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.