Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19840 635 / 0 ATPRP40C pre-mRNA-processing protein 40C (.1) AT1G44910 127 / 9e-30 ATPRP40A pre-mRNA-processing protein 40A (.1.2) AT3G19670 114 / 1e-25 ATPRP40B pre-mRNA-processing protein 40B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012908 [exp] 1129 / 0 AT3G19840 673 / 0.0 pre-mRNA-processing protein 40C (.1) Lus10033770 [exp] 115 / 7e-26 AT1G44910 682 / 0.0 pre-mRNA-processing protein 40A (.1.2) Lus10007723 [exp] 110 / 2e-24 AT1G44910 828 / 0.0 pre-mRNA-processing protein 40A (.1.2) Lus10006142 [exp] 109 / 4e-24 AT3G19670 648 / 0.0 pre-mRNA-processing protein 40B (.1) Lus10018659 [exp] 107 / 1e-23 AT1G44910 834 / 0.0 pre-mRNA-processing protein 40A (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G170400 [exp] 820 / 0 AT3G19840 631 / 0.0 pre-mRNA-processing protein 40C (.1) Potri.009G085400 [exp] 118 / 5e-27 AT1G44910 651 / 0.0 pre-mRNA-processing protein 40A (.1.2) Potri.001G289800 [exp] 115 / 4e-26 AT1G44910 667 / 0.0 pre-mRNA-processing protein 40A (.1.2) Potri.014G013100 [exp] 112 / 5e-25 AT1G44910 808 / 0.0 pre-mRNA-processing protein 40A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0680 [flax] [poplar] WW PF00397 [flax] [poplar] WW WW domain CL0584 [flax] [poplar] FF PF01846 [flax] [poplar] FF FF domain
Representative CDS sequence Show only first row Show all	>Lus10030562 pacid=23140635 polypeptide=Lus10030562 locus=Lus10030562.g ID=Lus10030562.BGIv1.0 annot-version=v1.0 ATGAATGTCTCTCCTTCACCGACTTCACAGGGGGTTCAGCTCCCCACACCGTCATCTTCGGCCACTGAGCTAGCCACTGGTAACCATATGGCTAACCAAT CAATCGCAGCTCCTCCTAGCGCAATTGACCCTCACATGTCTTCCATAGCTCAGCAGAGACCCGCTGGTGCTTACATTCATCCGCCTTACGGAGCTACGAT TCCTCAGCAGATGTACCCTAACGCGTATCATTCTTTTCAACCTCCACCTATGGCTGCTGCGAGCGCCGGCGCTCATCCTCCTCCGCCGCCGCACCATGGC GGTTGGTTGCAGCCAATGATGCAACCTGTCCCTGGGATGATGCGGCCTCCGCAGCAACAGCAGCAGTTCATGCCGTATTCTCCAGGTCCACCAGCTGTTT ATCCCACTGGCCATTTCCCTATGCCTGGAAACCCTAGCCTAAACCCTCGTCCTTCTCCCGCTGGAATGTTGCCAGTTCCAAGTGCGGTTCCTGTGAATGT GAACGTTCCTCCTCACATGGTCACTCCTCCTCCTCCTCCGGTGGCTTCTTCAGTTCAGCAGCAGTTTGTGCGGCCTCCAGGGATCCAGACTGAATTAACG CCTCCAGGAATCGAAAGTAAGAGTCAGCCTATTCAAGCTGAGGTGAAAAGTAATGCTGCACCTAATGAGGCGGCAGATGCTTGGACAGCCCACAGGTCTG ACACCGGAGTTATGTACTATTACAATGCTGTTTCAAGAGTTTCCACCTATGAAAAACCACCTGGGTTTAAATGGGAGTCAGAGAGGGCCGTAAGTCAGCC AACTCCAGTATCAATGGAGAATTTGGCTGGTACTGATTGGGCATTGGTGACCACAAATGACAGAAAGAAGTATTACTACAACAGTATAACTAAGGTAAGC AGCTGGCAGGTCCCAAATGAGGTGGTTGAACTGAGAAAGAAGCAGGACGAGATGTTAAAAGAACAAGCAATGTCAGTCCCAGCTCCTGATGTCTCTACTG ATACAGGATCTGCTCCAGTCACTTTGAATGCTCTGGCAATAAACAGTGGTGGTCGTGATGCCATAGCTCTGAGAGGCTTAAATGTGCCTGTGGCATCATC TGCATTGGATATGATTAAAAGGAAGCTGCAAGACGCCGGATCTCCGGTAAATTCATCCCATGCTCCAGTTTCATCAGGAGTTGCAACTTCTGATTCTAAA GCTTCAAAATCTGTTGAAGCTGCTACAGCTAAAGGCATGACTGGCGATAATAGCAAAGATAAAGTAAAAGATACCAATGGTGATGGTAATATGTCAGATT CATCTTCAGATTCAGAGGATGAAGACAGTGGCCCAACAAAGGAGGACTGCATCATTCAGTTCAAGGAGATGCTGAAAGAAAGAGGAGTGGCACCATTCTC AAAATGGGATAAAGAACTCCCGAAGATTCTATTTGATCCCCGTTTCAAGGCCATCCCAAGCCACTCAGCTCGGAGGTCCTTGTTTGAGCACTATGTGAAA ACACGTGCTGAGGAAGAGCGCAAGGAAAAACGTGCAGCTCAGAAGGCTGCAATAGAGGGATTTAAGCAGTTACTGGACGAAGCATCAGAGGATATTGATC AGTATACTGATTATCAAACATTCAGAAAGACGTGGGGCAATGACCGAAGGTTTGAGGCCCTAGACCGGAAGGACAGAGAGCATTTGCTGAATGAAAGGGT TCTTAGTTTGAAGAAGGCTGCACAAGATAAAGCTCATGCCGAGCGTTCAGCAACAGCTGCTAGTTTCAAATCTATGCTTCGAGAAAGAGGAGATATAACC TTGCAATCACGTTGGTCCAGGGTTAAGGATAGTCTAAGAAATGACCCCAGGTACAAGACTATAAAGCACGAGGATCGTGAGGCATTATTCAACGAGTATT TAGCAGACTTAAAAGCAGCTGAAGAGGAAGCTGATCGTGAGGTAAAAGCCAAAAGGGATGAACAGGAAAAGCTGAAAGAAAGGGAGCGAGAGTTGCGGAA GCGAAAGGAAAGAGATGAACAAGAAATGGAGAGGGTGCGGCTGAAAATTAGGAGGAAGGAAGCAGTTTCGTCTTTTCAGGCTTTGCTCGTCGAAACAATC AAGGACCCTCAGGCATCTTGGACAGAGTCTAAGGCCAGGCTGGAGAAGGATCCGCAAGGACGCTCAGCACACCCTGATTTAGACCCTTCCGAAATGGAGC GGCTTTTCCGCGAACATGTCAAGATGTTGCAAGAGCGAGGCCTGCAAGACTTCAAGTCCTTGTTGGCCGAAGTCATAACCGCCGAAGCAGCTGCAAACAA GACAGAAGACGAGAAGTCAGTCCTGGATTCATGGTCGACAGCAAAACGGCTACTGAAAGCCGATCCTAGGTACAATAAAGCCCCCAGGAAGGAGAGGGAG ATCCTCTGGCGACGATATGCTGACGATATGATGAAGAAGCAAAAAGCTGGAGGTGGTACGGATCAGGAGGACAGCAAGAAGCATACTGACTCCAAAAATA GGAGCTCTATCGACCAAGCGAAGAACGTATCTGGATCGAGGAGACCTCAAGATCGAAGATGA
AA sequence Show only first row Show all	>Lus10030562 pacid=23140635 polypeptide=Lus10030562 locus=Lus10030562.g ID=Lus10030562.BGIv1.0 annot-version=v1.0 MNVSPSPTSQGVQLPTPSSSATELATGNHMANQSIAAPPSAIDPHMSSIAQQRPAGAYIHPPYGATIPQQMYPNAYHSFQPPPMAAASAGAHPPPPPHHG GWLQPMMQPVPGMMRPPQQQQQFMPYSPGPPAVYPTGHFPMPGNPSLNPRPSPAGMLPVPSAVPVNVNVPPHMVTPPPPPVASSVQQQFVRPPGIQTELT PPGIESKSQPIQAEVKSNAAPNEAADAWTAHRSDTGVMYYYNAVSRVSTYEKPPGFKWESERAVSQPTPVSMENLAGTDWALVTTNDRKKYYYNSITKVS SWQVPNEVVELRKKQDEMLKEQAMSVPAPDVSTDTGSAPVTLNALAINSGGRDAIALRGLNVPVASSALDMIKRKLQDAGSPVNSSHAPVSSGVATSDSK ASKSVEAATAKGMTGDNSKDKVKDTNGDGNMSDSSSDSEDEDSGPTKEDCIIQFKEMLKERGVAPFSKWDKELPKILFDPRFKAIPSHSARRSLFEHYVK TRAEEERKEKRAAQKAAIEGFKQLLDEASEDIDQYTDYQTFRKTWGNDRRFEALDRKDREHLLNERVLSLKKAAQDKAHAERSATAASFKSMLRERGDIT LQSRWSRVKDSLRNDPRYKTIKHEDREALFNEYLADLKAAEEEADREVKAKRDEQEKLKERERELRKRKERDEQEMERVRLKIRRKEAVSSFQALLVETI KDPQASWTESKARLEKDPQGRSAHPDLDPSEMERLFREHVKMLQERGLQDFKSLLAEVITAEAAANKTEDEKSVLDSWSTAKRLLKADPRYNKAPRKERE ILWRRYADDMMKKQKAGGGTDQEDSKKHTDSKNRSSIDQAKNVSGSRRPQDRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19840		ATPRP40C	pre-mRNA-processing protein 40...		Lus10030562 [exp]	0	1
AT3G19840		ATPRP40C	pre-mRNA-processing protein 40...		Lus10012908 [exp]	1.7	0.9097
AT5G45140		NRPC2	nuclear RNA polymerase C2 (.1)		Lus10028778 [exp]	2.4	0.8768
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Lus10024447 [exp]	2.6	0.8606
AT1G33420			RING/FYVE/PHD zinc finger supe...		Lus10013775 [exp]	4.2	0.8180
AT3G45890		RUS1	ROOT UVB SENSITIVE 1, Protein ...		Lus10001047 [exp]	4.8	0.8138
AT1G19340			Methyltransferase MT-A70 famil...		Lus10032722 [exp]	5.2	0.8766
AT3G44600		AtCYP71, CYP71	cyclophilin 71, cyclophilin71 ...		Lus10006271 [exp]	5.5	0.8655
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10037787 [exp]	5.5	0.8218
AT1G13120		EMB1745	embryo defective 1745 (.1)		Lus10006979 [exp]	6.5	0.8144
AT4G32551		RON2, LUG	ROTUNDA 2, LEUNIG, LisH dimeri...		Lus10017754 [exp]	6.9	0.8651

Compare expression of checked genes

Lus10030562 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.