Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11920 575 / 0 glutaredoxin-related (.1) AT4G08550 295 / 5e-91 electron carriers;protein disulfide oxidoreductases (.1) AT5G66600 91 / 9e-19 Protein of unknown function, DUF547 (.1.2.3.4) AT2G23700 87 / 1e-17 Protein of unknown function, DUF547 (.1) AT5G42690 84 / 6e-17 Protein of unknown function, DUF547 (.1.2.3) AT3G13000 82 / 6e-16 Protein of unknown function, DUF547 (.1.2) AT5G60720 79 / 5e-15 Protein of unknown function, DUF547 (.1) AT1G16750 77 / 1e-14 Protein of unknown function, DUF547 (.1) AT4G37080 76 / 3e-14 Protein of unknown function, DUF547 (.1.2.3) AT5G47380 73 / 3e-13 Protein of unknown function, DUF547 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012909 [exp] 1149 / 0 AT3G11920 659 / 0.0 glutaredoxin-related (.1) Lus10034196 [exp] 829 / 0 AT3G11920 688 / 0.0 glutaredoxin-related (.1) Lus10029074 [exp] 817 / 0 AT3G11920 692 / 0.0 glutaredoxin-related (.1) Lus10016786 [exp] 92 / 4e-19 AT5G66600 666 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10022480 [exp] 90 / 2e-18 AT5G66600 662 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10033328 [exp] 83 / 3e-16 AT3G13000 712 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10016114 [exp] 77 / 2e-15 AT5G60720 308 / 6e-101 Protein of unknown function, DUF547 (.1) Lus10021756 [exp] 80 / 3e-15 AT4G37080 488 / 2e-166 Protein of unknown function, DUF547 (.1.2.3) Lus10032768 [exp] 79 / 3e-15 AT4G37080 495 / 3e-171 Protein of unknown function, DUF547 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G097600 [exp] 765 / 0 AT3G11920 708 / 0.0 glutaredoxin-related (.1) Potri.008G144800 [exp] 737 / 0 AT3G11920 707 / 0.0 glutaredoxin-related (.1) Potri.002G091200 [exp] 357 / 2e-113 AT4G08550 637 / 0.0 electron carriers;protein disulfide oxidoreductases (.1) Potri.005G130000 [exp] 92 / 4e-19 AT5G66600 664 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.007G003900 [exp] 89 / 4e-18 AT3G13000 654 / 0.0 Protein of unknown function, DUF547 (.1.2) Potri.007G033100 [exp] 85 / 5e-17 AT5G66600 721 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.001G157200 [exp] 83 / 2e-16 AT5G47380 642 / 0.0 Protein of unknown function, DUF547 (.1) Potri.002G001900 [exp] 80 / 2e-15 AT1G76620 414 / 1e-139 Protein of unknown function, DUF547 (.1) Potri.014G034800 [exp] 79 / 4e-15 AT5G42690 476 / 4e-163 Protein of unknown function, DUF547 (.1.2.3) Potri.004G150000 [exp] 78 / 7e-15 AT5G66600 447 / 2e-150 Protein of unknown function, DUF547 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04784 [flax] [poplar] DUF547 Protein of unknown function, DUF547 CL0172 [flax] [poplar] Thioredoxin PF00462 [flax] [poplar] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Lus10030563 pacid=23140558 polypeptide=Lus10030563 locus=Lus10030563.g ID=Lus10030563.BGIv1.0 annot-version=v1.0 ATGGAAGTAATCACCGGCGATGAACGTCAACCTCCTCTTACCGCCGTCACCGAAGAGCAAACCAATTCGAAGAATTGTTCAGATCAAGTTGACACGGCTC CCTCAGAGTCAGCCAAGCCAGAGGAGGCTGATGAAGTAGTAGTTCAAACGGCGGAGGATGCTGAGAATCACGACCACCATCAAGATCATTCTCAAATCGA GAAGCAAGGAATCGACGGCTACATACAAGTAATCACCCCTGATTCTCACCTCCCGAAGCCAGAGCCGCCTCCAGGTCTCTCCAATGAAGAAAATGAAATC ACCAGCTCTGATTTTTTCGGCCGGTCAAAATCGCTAACTGAGACCTTCGGGGCGGCGGTAGACATGCCGTCAATTGGGAAATTCTTCAAAGAGAGGAGCA GTAGCCTATCAGCAATCGCCAAGCGATTCAGCCAAATCAGGAATGATTATCAAGAGGACGAGTATGATTCCGCGCTGAGGAGAAAGAACGAGCTGCTCAA TCGCAATCGCAATCGAGACAACGACTCGATCTTCGAAGCGTCCGAGTTCAACATCTCGGGGCTGAAAGTGGTGGTCCGGATGAAACCCGATAACGACGAC GGAGGATTGTTAGGCAGAGTCAGCTTCTTCTCCAGATCAAACTGCCGAGACTGCTCCGCCGTTCGCGAGTTCTTCAAACAGATCAGAGGCCTCAAATTCG TTGAAATCAACGTCGACGTGTATCCGCGGAGGGAGAAGGAGCTGGTCCAACGGACGGGGACTCCTCGCGTGCCGCAGATATTCTTCAACGAGAAGCTGTT CGGCGGCCTGGTCGCTCTCAACTCGCTGAGGAACAGCGGCGAGTTTGACCGGAGACTGAAGGAGATGCTAGGGAAGCCTTGCCCGAAGGAAGCGCCGGCT CCGCCTGTGTATGGATTCGACGATCCGGAAGAGGATGATGATCAGTCGTCAGAGGAGGAGGATTTGGTTCGGATTGTGAAAGTGTTGAGGCAGAAGATGC CGATTGATGACCGGTTAATGAAGATGAAGATCGTTCGGAACTGCTTCGCCGGCGGTCAGATGGTGGAGGTTCTGATTCAACACTTGGACTGCGGCCGGAA GAAGGACGGGAACCATCTGTACCGTTTCCTGGAGCACGAACCATTCATCCCCAAATCCTACAACTTCCGAGTATCTACAAACGACCGCAACCCCAAACCC GCAGTTGACGTCGGGAAGAGGCTCTACAAGCTAATGTCGGCAATCCTCGAGTCGTACGCCTCCGATGACAGGCTGCACGTCGATTACGATGGCATCAGCA AAAGCGAGGAATTTCGAAGATACACGAACCTGGTAGTGGACCTCCAACGAGTGGACTTAACGCCACTCTCCACACAAGAGAAGACATCATTCTTCTTAAA CCTATACAACGCCATGGCAATACACGCCGTGATCAGAATAGGCAGCCCACAATGGCTAACAGACCGGAGATCGTTCTACTCCGATTTCAACTACGTCGTC GGAGGGTCCCCTTTCTCCCTGAACGCAATCAAGAACGGCGTACTCAGGAACAACAGAAGGTCCCCTTACTCTTTTGTCAAGCCGTTCGGGTCCGGAGACG GACGGTTACAGATAATGGCAGTAGTGGACGACAAGGTGAACCCTCTGGTCCATTTCGGGCTGTGTAACGGGACGAGATCGAGCCCCGCGGTGAGGTTCTT TACATCGGGAGGTGTGGAGACTGAGCTCAGGAGTGCTGCTAGGGAGTTTTTCAAGAGGGGTGGCATCGATGTTGACTTGGAGACAAGGACGGTTTATTTG TCTCGCATGATGAAGTGGTTTGGTGGTGATTTTGGGCAAGAGAAGGAGATACTGAAATGGGTGATGAGTTACTTGGATGGGAGCAAAGCAGGCTTGGTGA ACCATCTCTCGTCTGATGGAGGTCCTGTTCATATTATTTACCAGAACTACGATTGGTCTCTCAACTGTTAA
AA sequence Show only first row Show all	>Lus10030563 pacid=23140558 polypeptide=Lus10030563 locus=Lus10030563.g ID=Lus10030563.BGIv1.0 annot-version=v1.0 MEVITGDERQPPLTAVTEEQTNSKNCSDQVDTAPSESAKPEEADEVVVQTAEDAENHDHHQDHSQIEKQGIDGYIQVITPDSHLPKPEPPPGLSNEENEI TSSDFFGRSKSLTETFGAAVDMPSIGKFFKERSSSLSAIAKRFSQIRNDYQEDEYDSALRRKNELLNRNRNRDNDSIFEASEFNISGLKVVVRMKPDNDD GGLLGRVSFFSRSNCRDCSAVREFFKQIRGLKFVEINVDVYPRREKELVQRTGTPRVPQIFFNEKLFGGLVALNSLRNSGEFDRRLKEMLGKPCPKEAPA PPVYGFDDPEEDDDQSSEEEDLVRIVKVLRQKMPIDDRLMKMKIVRNCFAGGQMVEVLIQHLDCGRKKDGNHLYRFLEHEPFIPKSYNFRVSTNDRNPKP AVDVGKRLYKLMSAILESYASDDRLHVDYDGISKSEEFRRYTNLVVDLQRVDLTPLSTQEKTSFFLNLYNAMAIHAVIRIGSPQWLTDRRSFYSDFNYVV GGSPFSLNAIKNGVLRNNRRSPYSFVKPFGSGDGRLQIMAVVDDKVNPLVHFGLCNGTRSSPAVRFFTSGGVETELRSAAREFFKRGGIDVDLETRTVYL SRMMKWFGGDFGQEKEILKWVMSYLDGSKAGLVNHLSSDGGPVHIIYQNYDWSLNC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11920			glutaredoxin-related (.1)		Lus10030563 [exp]	0	1
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10030589 [exp]	1.0	0.9897
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10040509 [exp]	2.0	0.9878
AT5G59100			Subtilisin-like serine endopep...		Lus10004686 [exp]	3.0	0.9863
AT5G62150			peptidoglycan-binding LysM dom...		Lus10015011 [exp]	3.5	0.9806
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10035258 [exp]	3.5	0.9718
AT1G11300			protein serine/threonine kinas...		Lus10023391 [exp]	4.9	0.9821
AT4G14640		CAM8, AtCML8	calmodulin-like 8, calmodulin ...		Lus10014708 [exp]	5.5	0.9747
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10031388 [exp]	5.5	0.9820
AT2G01170		BAT1	bidirectional amino acid trans...		Lus10029533 [exp]	9.8	0.9638
AT2G18210			unknown protein		Lus10028324 [exp]	11.0	0.9743

Compare expression of checked genes

Lus10030563 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.