Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02820 191 / 2e-59 zinc knuckle (CCHC-type) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012910 [exp] 404 / 8e-143 AT3G02820 253 / 9e-84 zinc knuckle (CCHC-type) family protein (.1) Lus10000128 [exp] 40 / 0.0008 AT5G04280 144 / 2e-42 AtRZ-1c, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G097400 [exp] 185 / 7e-57 AT3G02820 214 / 1e-68 zinc knuckle (CCHC-type) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0511 [flax] [poplar] Retroviral_zf PF00098 [flax] [poplar] zf-CCHC Zinc knuckle CL0511 [flax] [poplar] PF07962 [flax] [poplar] Swi3 Replication Fork Protection Component Swi3
Representative CDS sequence Show only first row Show all	>Lus10030564 pacid=23140705 polypeptide=Lus10030564 locus=Lus10030564.g ID=Lus10030564.BGIv1.0 annot-version=v1.0 ATGGCGGAAGCAGCTCCAACTGGCTGTTACAAGTGTGGCCGCCCCGGCCACTGGTCCCGCGACTGTCCCGATTCCAAACCCGACCCTAGCTCTAACCCTA ATCCCTCTGATTCCGCGTCGAATCCCAAAAACTCGTTCACCAGATCTTTCCCGCCGAAATCTGGCAACAGCGGCGGCAGACCGCCTCTTCAACCAAAGCC GAAGAAGGTCCCCAGAACCAGGCCCAAGCTCACCCCGGAGCTTCTTCTTTCCGATGATGGCCTCGGCTTCATCCTCCGCTACTTCCCCAAGAACTTCAAG TTCCGTGGCCGTGGTCGCGAGGTTAGTGATTTGGGCCACTTGATTGGCTTATACAGTGAGTGGCATCAACATCTTCTCCCATACTACTCATTTGATCAGT TCATACAGAGGGTGGAACGAGTGGCTGCCACAAGGCGTGTGAAGATGCATATTGAACTATGGTTTTCTGGACTGTTATCTATGGCTGTTTACGTGGTGAA GTTAAAACATATGAACATTGAGTGTTCACTGATACAGGCTTTAAGGGATAAGGTAGCACAAGGAGGGGATCCAACAAAGTTGCATGAATCACCAGCCGAG GATGATAATCTGGATGAACAAGATCCTTCAATTCCCACCGAAGCCATGGATTCTGAGGACTTGCATTGGGAGGCAGGCCCATGTTCAGAAAACCATGATG CTGCCCCTTTCGAGGAAGATCTGCTTCGCGAGATTTACGAAAGCACTACTCAAGAGCCTCCAAAGACCACAGAGAGTGAGCACCAACAGCCAGATCAAAC CCATAGCAATGGAGGTGTTAGCACTGAGATCACAGAAGAACAGAAGGCTCGGATTGAAGCTAATAGGTTGAAAGCACTTGAGAGAGCTGCAGCTAGAAAA CTGCTGAAGCAGCAGTCTACTGCTGCTGTATCCGACCTATGA
AA sequence Show only first row Show all	>Lus10030564 pacid=23140705 polypeptide=Lus10030564 locus=Lus10030564.g ID=Lus10030564.BGIv1.0 annot-version=v1.0 MAEAAPTGCYKCGRPGHWSRDCPDSKPDPSSNPNPSDSASNPKNSFTRSFPPKSGNSGGRPPLQPKPKKVPRTRPKLTPELLLSDDGLGFILRYFPKNFK FRGRGREVSDLGHLIGLYSEWHQHLLPYYSFDQFIQRVERVAATRRVKMHIELWFSGLLSMAVYVVKLKHMNIECSLIQALRDKVAQGGDPTKLHESPAE DDNLDEQDPSIPTEAMDSEDLHWEAGPCSENHDAAPFEEDLLREIYESTTQEPPKTTESEHQQPDQTHSNGGVSTEITEEQKARIEANRLKALERAAARK LLKQQSTAAVSDL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02820			zinc knuckle (CCHC-type) famil...		Lus10030564 [exp]	0	1
AT4G28310			unknown protein		Lus10018597 [exp]	2.8	0.9449
AT2G37960			unknown protein		Lus10021116 [exp]	3.7	0.9509
AT5G43250	CCAAT	NF-YC13	"nuclear factor Y, subunit C13...		Lus10030657 [exp]	4.9	0.9323
AT5G59690			Histone superfamily protein (....		Lus10014264 [exp]	5.3	0.9505
AT1G73620			Pathogenesis-related thaumatin...		Lus10009058 [exp]	6.5	0.9454
AT3G02820			zinc knuckle (CCHC-type) famil...		Lus10012910 [exp]	6.7	0.9404
AT1G57800		ORTH3, VIM5	VARIANT IN METHYLATION 5, ORTH...		Lus10038731 [exp]	7.7	0.9359
AT5G45700			Haloacid dehalogenase-like hyd...		Lus10007321 [exp]	11.8	0.9346
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10005891 [exp]	12.4	0.9076
AT1G50240		FU	FUSED, Protein kinase family p...		Lus10039168 [exp]	13.7	0.9295

Compare expression of checked genes

Lus10030564 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.