Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04645 87 / 1e-22 Plant self-incompatibility protein S1 family (.1) AT3G16970 83 / 4e-21 Plant self-incompatibility protein S1 family (.1) AT5G12070 82 / 2e-20 Plant self-incompatibility protein S1 family (.1) AT5G12060 81 / 3e-20 Plant self-incompatibility protein S1 family (.1) AT4G16195 80 / 1e-19 Plant self-incompatibility protein S1 family (.1) AT4G24974 77 / 7e-19 Plant self-incompatibility protein S1 family (.1) AT4G24975 76 / 2e-18 Plant self-incompatibility protein S1 family (.1) AT4G24973 73 / 4e-17 Plant self-incompatibility protein S1 family (.1) AT3G17080 71 / 3e-16 Plant self-incompatibility protein S1 family (.1) AT1G26798 70 / 1e-15 Plant self-incompatibility protein S1 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030964 [exp] 97 / 2e-26 AT5G12060 102 / 2e-28 Plant self-incompatibility protein S1 family (.1) Lus10030965 [exp] 94 / 5e-25 AT3G16970 89 / 2e-23 Plant self-incompatibility protein S1 family (.1) Lus10011753 [exp] 90 / 1e-22 AT3G16970 90 / 1e-22 Plant self-incompatibility protein S1 family (.1) Lus10011069 [exp] 85 / 1e-21 AT4G16195 89 / 2e-23 Plant self-incompatibility protein S1 family (.1) Lus10011068 [exp] 83 / 6e-21 AT4G16195 103 / 5e-29 Plant self-incompatibility protein S1 family (.1) Lus10008107 [exp] 82 / 2e-20 AT4G16195 98 / 1e-26 Plant self-incompatibility protein S1 family (.1) Lus10000480 [exp] 78 / 2e-19 AT5G12060 84 / 7e-22 Plant self-incompatibility protein S1 family (.1) Lus10013145 [exp] 76 / 7e-18 AT4G16195 88 / 8e-23 Plant self-incompatibility protein S1 family (.1) Lus10023675 [exp] 64 / 2e-13 AT3G24060 162 / 3e-52 Plant self-incompatibility protein S1 family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G148630 [exp] 87 / 2e-22 AT1G04645 106 / 3e-30 Plant self-incompatibility protein S1 family (.1) Potri.018G148700 [exp] 84 / 5e-21 AT1G04645 88 / 5e-23 Plant self-incompatibility protein S1 family (.1) Potri.018G148366 [exp] 82 / 9e-21 AT1G04645 103 / 1e-29 Plant self-incompatibility protein S1 family (.1) Potri.017G144361 [exp] 83 / 1e-20 AT4G24975 110 / 1e-31 Plant self-incompatibility protein S1 family (.1) Potri.010G008300 [exp] 71 / 2e-16 AT3G17080 74 / 8e-18 Plant self-incompatibility protein S1 family (.1) Potri.003G175200 [exp] 70 / 8e-16 AT3G24060 177 / 2e-58 Plant self-incompatibility protein S1 family (.1) Potri.001G053100 [exp] 63 / 3e-13 AT3G24060 171 / 2e-55 Plant self-incompatibility protein S1 family (.1) Potri.003G201300 [exp] 61 / 3e-12 AT2G06090 65 / 5e-14 Plant self-incompatibility protein S1 family (.1) Potri.001G053300 [exp] 60 / 4e-12 AT3G24060 82 / 2e-20 Plant self-incompatibility protein S1 family (.1) Potri.002G252500 [exp] 54 / 8e-10 AT4G16295 116 / 9e-34 S-protein homologue 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05938 [flax] [poplar] Self-incomp_S1 Plant self-incompatibility protein S1
Representative CDS sequence Show only first row Show all	>Lus10030565 pacid=23140654 polypeptide=Lus10030565 locus=Lus10030565.g ID=Lus10030565.BGIv1.0 annot-version=v1.0 ATGGAGATCCAGAACAGCATGATATTTCCACCAACCCTCCTCCTCCTCATCATCATAATGACGATATCACCCTCGACGGCGCCCAATCCACCGTCACCTT CGCCGATGAAGTGGACGCCGTTCCCGAAGAAGACGGTGACGTTGGCGAACGAGCTGACGAGCCACGACGTGCTGGAGATCCGGTGCAGGTCGAAAGACGA CGATCTGGGAAAGCACACATTGAAGAAGAAGGACAATTTCCATTGGAGATTCCACAACAGCGCGTGGGGGAACACACTCTTCTACTGCTCGTTCCAGTGG GGGGAAGGGGTCCGCTGGTTTGACGTCTACGTTCAGGAGAGGGACACCGCGCGTTGCGTTCACTGCAATTGGAGCGTTAAGGAGACGGGGCCTTGCTTGA GTAATAACCATGAGAGTTGGAGAGCTTGTTATAAATGGAACAAATCGTGA
AA sequence Show only first row Show all	>Lus10030565 pacid=23140654 polypeptide=Lus10030565 locus=Lus10030565.g ID=Lus10030565.BGIv1.0 annot-version=v1.0 MEIQNSMIFPPTLLLLIIIMTISPSTAPNPPSPSPMKWTPFPKKTVTLANELTSHDVLEIRCRSKDDDLGKHTLKKKDNFHWRFHNSAWGNTLFYCSFQW GEGVRWFDVYVQERDTARCVHCNWSVKETGPCLSNNHESWRACYKWNKS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16970			Plant self-incompatibility pro...		Lus10030565 [exp]	0	1
AT4G35980			unknown protein		Lus10042598 [exp]	1.4	0.8483
AT5G58610			PHD finger transcription facto...		Lus10018681 [exp]	5.3	0.8323
AT4G16480		ATINT4	inositol transporter 4 (.1)		Lus10038808 [exp]	6.3	0.7534
AT3G14470			NB-ARC domain-containing disea...		Lus10022900 [exp]	7.1	0.7860
AT5G22260		MS1	male sterility 1, RING/FYVE/PH...		Lus10030773 [exp]	7.7	0.8091
AT3G47600	MYB	ATMYB94, AtMYBC...	myb domain protein 94 (.1)		Lus10005245 [exp]	10.1	0.7698
AT2G23570		ATMES19	ARABIDOPSIS THALIANA METHYL ES...		Lus10020004 [exp]	11.7	0.8188
AT4G26120			Ankyrin repeat family protein ...		Lus10024843 [exp]	16.5	0.7178
AT5G02130		NDP1	Tetratricopeptide repeat (TPR)...		Lus10023783 [exp]	22.4	0.7507
AT1G79800		AtENODL7	early nodulin-like protein 7 (...		Lus10018758 [exp]	26.5	0.7628

Compare expression of checked genes

Lus10030565 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.