Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21200 369 / 5e-128 ATGA2OX8 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) AT1G50960 276 / 2e-91 ATGA2OX7 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 7, gibberellin 2-oxidase 7 (.1) AT5G58660 170 / 4e-50 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 168 / 4e-49 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G19010 164 / 6e-48 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT4G10490 157 / 6e-45 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10500 153 / 2e-43 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G55970 153 / 2e-43 ATJRG21 jasmonate-regulated gene 21 (.1) AT1G77330 151 / 2e-43 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 154 / 3e-43 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012912 [exp] 632 / 0 AT4G21200 368 / 2e-127 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10029081 [exp] 561 / 0 AT4G21200 365 / 3e-126 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10013069 [exp] 540 / 0 AT4G21200 366 / 5e-126 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10007640 [exp] 353 / 1e-121 AT4G21200 429 / 1e-151 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10006759 [exp] 350 / 3e-120 AT4G21200 419 / 2e-147 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10018372 [exp] 346 / 9e-119 AT4G21200 419 / 2e-147 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10004808 [exp] 176 / 2e-52 AT5G05600 457 / 5e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005037 [exp] 172 / 1e-50 AT3G11180 471 / 3e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10030934 [exp] 169 / 1e-49 AT1G17020 337 / 2e-114 senescence-related gene 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G096800 [exp] 510 / 0 AT4G21200 362 / 8e-125 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.008G145300 [exp] 489 / 6e-175 AT4G21200 354 / 1e-121 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.004G022800 [exp] 372 / 4e-129 AT4G21200 441 / 7e-156 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.011G026700 [exp] 361 / 9e-125 AT4G21200 444 / 1e-157 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.001G418200 [exp] 339 / 3e-116 AT4G21200 369 / 8e-128 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.011G134000 [exp] 302 / 1e-101 AT4G21200 340 / 1e-116 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.011G134100 [exp] 291 / 2e-97 AT4G21200 324 / 2e-110 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.001G278200 [exp] 214 / 2e-67 AT5G58660 312 / 2e-105 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.004G146000 [exp] 179 / 2e-53 AT3G19000 357 / 3e-122 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.016G117100 [exp] 178 / 6e-53 AT5G05600 491 / 4e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10030567 pacid=23140785 polypeptide=Lus10030567 locus=Lus10030567.g ID=Lus10030567.BGIv1.0 annot-version=v1.0 ATGATGCTTACGACCAACCCTCCTCTCATTCACGGTTACGAGAAGGTCTCGCGGCTACCTCCATTAGAACACCAGCACGAGCTTCTCCACTCATCCTCTG TAATGGAGGAATGCCAGCTACCGCTGATAGACCTCAGCGGACTCAGCAGCTGCGACGAAAGGGAGCGAGCTAATTGCGCTGCTGCTATATGCAGGGCTTC GTCAGAATGGGGATTCTTTCAGGTGGTTAACCATGGGATCGACCTCGATCTTGTTAGAAAGATGAGGAAAGAACAGGTGGATTTGTTCCAACTGCCATTT GATAAGAAAGCGAGTAGCGGGTTGCTGAACAACTCGTACCGTTGGGGGACTCCAACGGCTACTTGTCCGAAGCAGTTCTCGTGGTCCGAAGCTTTCCATG TTCCTTTGTCGATGATTTCGCAGGAGGACTGCTACCAAGAGTTCACTTCTTTGAGGGAAGTGATGGTGGAATTTGCAGCAGCAATGTCGAAGCTGGCGGG ATCGCTTGCGGGGGTCTTGGTAGAGAACTTGGGGCATTCAAGTGGGGATTTTGAGGACATGTGTGAAGAAAGAAGTTGCTTTCTTAGGCTTAATAGATAT CCAGCTTGTCCGGTGTCCCCGGAGATTTTCGGATTAGTGCCACACACTGACAGTGATTTCCTCACGATTCTGTCGCAAGATGAAGTAGGGGGACTTCAGC TCATGAAAGATTCCAGATGGGTTGCTGTAAAACCTAATCCAGATGCATTCATAGTGAACATTGGTGATCTTTTTCAGGCATGGAGCAACGACATCTATAA AAGTGTGGAACACAAGGTTATGGCGAATGCTAAGACAGAACGATACTCGATCGCCTATTTCTTGTGCCCTTCGTACGAGACATCAATAGGGAGTTGCGGA GAACCATCCAAGTACAGGAGATTCACTTTCGGAGAGTTCAGGAGCCAAATTCAAGCAGAGGTCAAGAACATTGGCTATAAAATCGGCCTGCCAAGCTTTC AGTTATAA
AA sequence Show only first row Show all	>Lus10030567 pacid=23140785 polypeptide=Lus10030567 locus=Lus10030567.g ID=Lus10030567.BGIv1.0 annot-version=v1.0 MMLTTNPPLIHGYEKVSRLPPLEHQHELLHSSSVMEECQLPLIDLSGLSSCDERERANCAAAICRASSEWGFFQVVNHGIDLDLVRKMRKEQVDLFQLPF DKKASSGLLNNSYRWGTPTATCPKQFSWSEAFHVPLSMISQEDCYQEFTSLREVMVEFAAAMSKLAGSLAGVLVENLGHSSGDFEDMCEERSCFLRLNRY PACPVSPEIFGLVPHTDSDFLTILSQDEVGGLQLMKDSRWVAVKPNPDAFIVNIGDLFQAWSNDIYKSVEHKVMANAKTERYSIAYFLCPSYETSIGSCG EPSKYRRFTFGEFRSQIQAEVKNIGYKIGLPSFQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10030567 [exp]	0	1
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10013069 [exp]	3.0	0.7813
AT2G36780			UDP-Glycosyltransferase superf...		Lus10014402 [exp]	4.8	0.8026
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Lus10030484 [exp]	6.5	0.8004
AT4G19460			UDP-Glycosyltransferase superf...		Lus10033297 [exp]	14.5	0.7515
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10038282 [exp]	18.8	0.7496
AT2G40940		ERS1	ethylene response sensor 1 (.1...		Lus10010310 [exp]	19.4	0.7754
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Lus10017830 [exp]	19.7	0.6710
AT5G14890			NHL domain-containing protein ...		Lus10001933 [exp]	22.4	0.6704
AT2G38870			Serine protease inhibitor, pot...		Lus10014740 [exp]	22.6	0.7380
AT5G05340			Peroxidase superfamily protein...		Lus10009934 [exp]	25.0	0.7414

Compare expression of checked genes

Lus10030567 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.