Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60860 926 / 0 AGD2 ARF-GAP domain 2 (.1) AT1G10870 923 / 0 AGD4 ARF-GAP domain 4 (.1) AT5G13300 634 / 0 AGD3, VAN3, SFC ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) AT5G61980 631 / 0 AGD1 ARF-GAP domain 1 (.1) AT3G17660 99 / 4e-23 AGD15 ARF-GAP domain 15 (.1) AT5G54310 100 / 7e-22 NEV, AGD5 NEVERSHED, ARF-GAP domain 5 (.1) AT4G05330 89 / 7e-19 AGD13 ARF-GAP domain 13 (.1) AT4G21160 86 / 8e-18 ZAC, AGD12 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) AT3G07940 83 / 1e-16 Calcium-dependent ARF-type GTPase activating protein family (.1) AT4G17890 77 / 1e-14 UBP20, AGD8 ARF-GAP domain 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030921 [exp] 1336 / 0 AT1G60860 608 / 0.0 ARF-GAP domain 2 (.1) Lus10001799 [exp] 627 / 0 AT5G13300 1201 / 0.0 ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) Lus10002572 [exp] 597 / 0 AT5G13300 1149 / 0.0 ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) Lus10016724 [exp] 578 / 0 AT5G61980 1060 / 0.0 ARF-GAP domain 1 (.1) Lus10036018 [exp] 555 / 0 AT5G61980 1009 / 0.0 ARF-GAP domain 1 (.1) Lus10027249 [exp] 99 / 6e-23 AT5G54310 213 / 2e-66 NEVERSHED, ARF-GAP domain 5 (.1) Lus10018445 [exp] 98 / 3e-21 AT5G54310 265 / 2e-83 NEVERSHED, ARF-GAP domain 5 (.1) Lus10011238 [exp] 98 / 4e-21 AT5G54310 261 / 5e-82 NEVERSHED, ARF-GAP domain 5 (.1) Lus10038582 [exp] 97 / 8e-21 AT5G54310 508 / 2e-178 NEVERSHED, ARF-GAP domain 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G066800 [exp] 671 / 0 AT5G13300 1192 / 0.0 ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) Potri.003G163200 [exp] 667 / 0 AT5G13300 1146 / 0.0 ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) Potri.015G105500 [exp] 627 / 0 AT5G61980 1110 / 0.0 ARF-GAP domain 1 (.1) Potri.011G127000 [exp] 101 / 2e-22 AT5G54310 466 / 4e-161 NEVERSHED, ARF-GAP domain 5 (.1) Potri.001G406300 [exp] 101 / 3e-22 AT5G54310 400 / 6e-135 NEVERSHED, ARF-GAP domain 5 (.1) Potri.011G044100 [exp] 100 / 5e-22 AT5G54310 347 / 3e-115 NEVERSHED, ARF-GAP domain 5 (.1) Potri.012G036900 [exp] 96 / 8e-22 AT3G17660 260 / 4e-88 ARF-GAP domain 15 (.1) Potri.004G035800 [exp] 99 / 2e-21 AT5G54310 333 / 2e-109 NEVERSHED, ARF-GAP domain 5 (.1) Potri.001G372000 [exp] 87 / 4e-18 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.011G098500 [exp] 85 / 2e-17 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [flax] [poplar] PH PF00169 [flax] [poplar] PH PH domain CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0145 [flax] [poplar] Golgi-transport PF03114 [flax] [poplar] BAR BAR domain CL0145 [flax] [poplar] PF01412 [flax] [poplar] ArfGap Putative GTPase activating protein for Arf
Representative CDS sequence Show only first row Show all	>Lus10030568 pacid=23140663 polypeptide=Lus10030568 locus=Lus10030568.g ID=Lus10030568.BGIv1.0 annot-version=v1.0 ATGGCGGCTTTCGTTAATCTGGACGATTCTCCGATGTTCCAGAAAGAGATAGCAGCTATAGGGAAGATGGCAGATGAGTTGAAGGAACGTTGCCAAAGGC TTTTTAACGGGTCTCAGAAATTTGTGACAGCTATTGGAGAGGCATGCAATGCAGACACAGTACTAGCTGATTCACTAGAAGTATTTGGAGGAGGACAAGA TGATCCAATCAGTGTATCCATTGGAGGCCCTGTCATGTCCATGTTCGTTAATTCACTTCGTGAGCTAGCGTCCTATAAGGAGCTTCTTCGTTCTCAAGTA GAGCATGTGCTAGTAGATCGTTTGACACAGTTTGTGGATGTTGATTTGCAAGATGCACTGGAGTCTCGGAAGCGACTGGACAAAGCAGTGTATACTTATG ATCAGTCACGGGATAAGTATGTATCTTTGAAGAAAAATGCCCGTGGAGACATAGTTGAAGAATTGGAAGAGAATCTACAGAACTCAAAGTCAGCATATAA TCTACAGAACTCAAAGTCTGCATACGAGAGAAGCCGCTTTAATCTAGTTAGTGGCCTCATGAATATTGAAGCTAAGAAGAAATACGAATTCTTGGAATCA ATGAGTGCAGTTATGGATGCCCATCTGAGATACTTTAAGCAGGGATATGAGTTGTTCCGTCAAATGGAGCCATTTGTTCACCAGGTACTGACATATGCTC AACAATCAAAAGAACATGCTAGTATTGAGCAAGATAAACTTGCCAAAAGGATCCAGGAATTTAGGACCCAATCTGAGTTAGACAGCATACAAGCTTCAAG AAATTTAGAACCTTCAACAAGTGGTGAGAGTTTTGCTGGTCATGGCATGAGCTCCTACAAAAATATAGAAGGAATCGTGCAGTCTTCCACAAATGGAGAG GTTCAGATTCTCAAACAAGGATATCTACTAAAACGTTCCTCTAGCTCAAGAGGAGACTGGAAGAGAAGGTTCTTTGGTGTTCAACATAGTTCAACTGCCT CAGCTGATTATAATACAGGGGTGTTTGCTAGATTTCGTACAAGGCACAATAGGGCTGCATCATTTGATGAAGGCGGTCTAGACTGCTGCAGAGTTAATCT TCAGACTTCAACACTGAAGATGGACTCGGACAATACGGACTTACGACTTTGCTTCAGGATAATCTCTCCATCAAAAACTTTCACACTGCAGGCTGAAAAT GCAGCAGATAGGATGGATTGGGTAAAAAAAATCAGTGGAGCAATTGCTTCACTCCTTAACTTTCAGCTCTTCCGACAGTCAAATTTAGGGAAAAGAACTC TCGAGGCCAAAGAAGCTGCTGCTTCTCGTAAATCTCAAGAACAAGAAAATTATCAAAATTCTGAAGATGATTCAGTTTCTGGAATCCTAAGAGAAATTCC AGGAAATGAGCTTTGTGCTGAATGCAGTGCTCAGGAACCTGATTGGGCATCTCTTAATCTTGGCATATTATTATGCATTGAGTGCTCTGGTGTTCACCGA AACCTTGGCGTTCATATTTCAAAGGTGAGGTCATTAACCTTTGATGTCAAGGTTTGGGAGCCAACAGTCTTAGACTTATTCCGTGCACTGGGAAACGCGT ACAGCAACTCTTTGTGGGAAGGACTGCTGCTTCTTGAAAATAAGAGGATAAAAGAATCCAACGTCACCATATCAGTTACTAAACCCGGCCCCAAAGATGC CATTTACTCTAAGGAGATGTATATTCATGCTAAGTATGTTGAAAAGGCTCTGGTCATCAGAGAAGCAACTGAATCTGGCTCTATACCAAACAACAGAACC ATCTGGCTAGCTGTGAAGACGAACAATCTACGAGAAGTATATCGATGCATTGTGATTTCTGACAAAAACATTGTGAACACCATATTCGACGAGATTGCTC CAGTCGATCTACACCACCAGATAAATGATCCAGAGGATCATACATCCGACTCCTCTGCAATAGACAAGATATTCTGTGATCCGGAATCATGCCAGCGAAT CAAAGATTCCAATGATCCAAGGAACTGTTTCCAAGGCTGCTCGTTACTCCACCTGGCATGTTACTACGGTAACACAGTCATGCTTGAATTGCTGCTGCAG TTCGGTGCTGATATAAACTGGAGGGACTTCCATGGGAGGACTCCCTTGCACCATTGCATTGCCAAAGGTGATTATCCATTGGCCAAGTTCCTACTCAGAA GAGGAGCATCACCGGCAGTGAAAGATGGCCGGGGTCTAAGTGTGCTGGAAAGGGCAATGGAGATCGGTGCAATATCTGACGAGGAACTATTCATATTGCT AGCTGAAACATAG
AA sequence Show only first row Show all	>Lus10030568 pacid=23140663 polypeptide=Lus10030568 locus=Lus10030568.g ID=Lus10030568.BGIv1.0 annot-version=v1.0 MAAFVNLDDSPMFQKEIAAIGKMADELKERCQRLFNGSQKFVTAIGEACNADTVLADSLEVFGGGQDDPISVSIGGPVMSMFVNSLRELASYKELLRSQV EHVLVDRLTQFVDVDLQDALESRKRLDKAVYTYDQSRDKYVSLKKNARGDIVEELEENLQNSKSAYNLQNSKSAYERSRFNLVSGLMNIEAKKKYEFLES MSAVMDAHLRYFKQGYELFRQMEPFVHQVLTYAQQSKEHASIEQDKLAKRIQEFRTQSELDSIQASRNLEPSTSGESFAGHGMSSYKNIEGIVQSSTNGE VQILKQGYLLKRSSSSRGDWKRRFFGVQHSSTASADYNTGVFARFRTRHNRAASFDEGGLDCCRVNLQTSTLKMDSDNTDLRLCFRIISPSKTFTLQAEN AADRMDWVKKISGAIASLLNFQLFRQSNLGKRTLEAKEAAASRKSQEQENYQNSEDDSVSGILREIPGNELCAECSAQEPDWASLNLGILLCIECSGVHR NLGVHISKVRSLTFDVKVWEPTVLDLFRALGNAYSNSLWEGLLLLENKRIKESNVTISVTKPGPKDAIYSKEMYIHAKYVEKALVIREATESGSIPNNRT IWLAVKTNNLREVYRCIVISDKNIVNTIFDEIAPVDLHHQINDPEDHTSDSSAIDKIFCDPESCQRIKDSNDPRNCFQGCSLLHLACYYGNTVMLELLLQ FGADINWRDFHGRTPLHHCIAKGDYPLAKFLLRRGASPAVKDGRGLSVLERAMEIGAISDEELFILLAET

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60860		AGD2	ARF-GAP domain 2 (.1)		Lus10030568 [exp]	0	1
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10037504 [exp]	3.5	0.8106
AT4G02580			NADH-ubiquinone oxidoreductase...		Lus10002721 [exp]	3.5	0.8163
AT2G16880			Pentatricopeptide repeat (PPR)...		Lus10041421 [exp]	4.5	0.8129
AT1G11160			Transducin/WD40 repeat-like su...		Lus10041006 [exp]	8.3	0.7629
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10017472 [exp]	9.9	0.7893
AT5G11640			Thioredoxin superfamily protei...		Lus10011619 [exp]	11.5	0.7702
AT2G42500		PP2A-3, PP2A-4	protein phosphatase 2A-3 (.1.2...		Lus10013754 [exp]	13.5	0.7943
AT1G14020			O-fucosyltransferase family pr...		Lus10036785 [exp]	14.1	0.7704
AT5G61060		HDA5, HDA05, AT...	histone deacetylase 5 (.1.2)		Lus10034689 [exp]	14.3	0.8110
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10026190 [exp]	14.4	0.7897

Compare expression of checked genes

Lus10030568 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.